RNA id: XR_005053264.1


Basic Information

Item Value
RNA id XR_005053264.1
length 2396
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118966057
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88224741 ~ 88230342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcGACAGAGAGGAGAGTCGGGGGGACTGAGATCGGGGTCATATTCATTATGGCACATCATAGCAAAACAGAATACGAAAAACaaacgtttcttattggacaacttCAGGCCGTTTTCGATCGGTTTTCTTCCATGCGATGccaaatgaacacaacccaggagtGTCAGTCTGTGTGTAATGTGTCAGGTGTGAGATCTGTATTTGAGACCAGAAGATACAGCCTTTTATTCTCTGGTAGTGTTAAAGGATTAGTTAACCAGGTTTACATTTCCTCAGGCTTGTTCAACATTACAGGCCGACTGATCTACACAGACCCTTGCATCATAAATATCTACCTCATTGTTCATTTGTAGAGGAGTCAAGTCACATTAGGGTTTTGACCCTCGAGAACACGGCCCTCCTCCTATTCAGTCCCTCTGCTCTGGGCTcagttcctcctctcttctctccctttggTCTTTTTCCCTAAGTGCTACTTTGTTTATGGATTAGAAattgcttccttccttcctccggCAGCTCGCCCCCCtggggccagtgtgtgtgtgttgtatttacCACGGGGGTGACCTGTAAACCCATATATGATGGAAGTAATAATgctcccgtctctctcctgtcccatTCTACTTTGGACACCATTTTGAGATCTCTGGGTCCACCTCAAGTCGTAAGTGGTTTCTTTTTAATAATATAGATGATGcgcctcactctcttctctcgctctccgttGGAGAATGAACAGTATGATGTCCGATGTTTCCGTGGTCGGAGGAGATGGGAAGGTCACCGTCTGCTGTTAACCTTTCGGTCTGTTTTGTCCTTCAGAAGAAAGAGCCAGACAACAAGAACTTACTTATAAATCAATTGACTTTATTTAAAATCAGCGACGTCAGGCAGTTTACACTATGaacaataagaaaataaaaagacagaaacataaaataaaaagATGAAAGATCCAGATAACAACCACTGCTCTTGGCACCGGATAGAACATTATGAAAACAACTAATATTATACTAGgcttgtgtgggggggggggggggggtaatcatGTTGTGATGGTGAGAGCCGGACTAGTGAACTTAAATACCAGCTTTTTACTTCGTCTCAGAGGACATGTTCCAGGCTGATTACGCTGTTTAACCTATCAGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAACCCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAACCCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAACCCTTCAGTGGCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAACCCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAACCCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGCTAACCAGACAGATTAACCCTTCAGTGGCTGGATAGGTGCTGACCACATCTAGGTCCAGCTAACCAGACAGATTAACCCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAACCCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGCTAACCAGACAGATTAACCCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCGGACAGATTAACCCTTCAGTGTCTGGATAGGTACTGACCACATCTAGGTCCAGTTAACCAGACAGATTAACCCTTCAGTGGCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAAACCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCAGACAGATTAAACCTTCAGTGTCTGGATAGGTGCTGACCACATCTAGGTCCAGTTAACCGGACAGATTTAAGTCTGGTACCTGTTTCAAAATGTATTCCAATGAAAAATCTCCATGGAGAATGTTTAGTCCAGGAcaaatctgtgtctgggaaacagaTACCATAGGATGTAGCAATCTGATACCCGACGGTGAAGTCCATGACGTGGCATAGAACCATTGGTTGTGGTGTGCAGCTCGACTGGAACAGACCTAATAAGCACAACTTTCAGATTGAACCATGTTTTATATATCATGACCCTCACACAACCCCACTCCTGAACCCCCGACCTTTGAACCCCACTACCGTCACTAAGGTCAGGGGGTCATGTCCCTTATAATCATcttcactatcatcatcatcatcaattcTTCATTAAAAACAAGGAGGAATTTTCATATGACATATGCTTCGTTTTAAAATGGTCGTTcaccacaaaaaaataaaattatgtaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109115 lncRNA downstream 1544 88224741 ~ 88226344 (-) False LOC118966057
TU109120 lncRNA downstream 1544 88224741 ~ 88226344 (-) False LOC118966057
TU109123 lncRNA downstream 1544 88224741 ~ 88226344 (-) False LOC118966057
TU109108 lncRNA downstream 3210 88223331 ~ 88224678 (-) False G98505
TU109112 lncRNA downstream 3210 88223331 ~ 88224678 (-) True G98505
TU109143 lncRNA upstream 2709 88233051 ~ 88234672 (-) True LOC118966058
TU109145 lncRNA upstream 7658 88238000 ~ 88238331 (-) True G98514
TU109153 lncRNA upstream 23404 88253746 ~ 88254060 (-) True G98522
TU109160 lncRNA upstream 33131 88263473 ~ 88264499 (-) True G98528
TU109164 lncRNA upstream 38661 88269003 ~ 88269227 (-) True G98532
XM_036988142.1 mRNA downstream 25730 88178952 ~ 88202158 (-) False papolg
XR_005053261.1 mRNA downstream 25730 88178952 ~ 88202158 (-) False papolg
XR_005053262.1 mRNA downstream 25730 88178952 ~ 88202158 (-) True papolg
LOC118966733 mRNA downstream 63277 88159117 ~ 88164611 (-) True LOC118966733
XM_036988136.1 mRNA downstream 83422 88131038 ~ 88144466 (-) True LOC100499622
XR_005053265.1 mRNA upstream 1599 88231941 ~ 88234270 (-) False LOC118966058
XM_036988180.1 mRNA upstream 6239 88236581 ~ 88270978 (-) False LOC118936686
XM_036988175.1 mRNA upstream 6239 88236581 ~ 88270980 (-) True LOC118936686
XR_005053271.1 mRNA upstream 484531 88714873 ~ 88715334 (-) False LOC118966063
XR_005053270.1 mRNA upstream 484531 88714873 ~ 88715755 (-) False LOC118966063
TU109129 other downstream 7084 88218829 ~ 88220804 (-) False G98510
TU109132 other downstream 7084 88218829 ~ 88220804 (-) False G98510
TU109139 other downstream 7084 88218829 ~ 88220804 (-) False G98510
TU109140 other downstream 7084 88218829 ~ 88220804 (-) False G98510
TU109134 other downstream 7084 88219771 ~ 88220804 (-) False G98510
TU109183 other upstream 83934 88314276 ~ 88314696 (-) True G98549
TU109256 other upstream 321632 88551974 ~ 88644067 (-) True G98616
TU109341 other upstream 547197 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other upstream 547562 88777904 ~ 88782029 (-) True LOC118966065
TU109555 other upstream 845505 89075847 ~ 89076238 (-) True G98878

Expression Profile