RNA id: TU109143


Basic Information

Item Value
RNA id TU109143
length 1315
lncRNA type sense_over
GC content 0.50
exon number 2
gene id LOC118966058
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88231941 ~ 88234672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacagacagacagacagttggtaGGAGATAGTGTCTAGATACCACagggtggacagacagacagacagacaggcagttgGTAGGAGATAGTGTCTAGATACCGCagggtggacagacagacagttggtaGGAGATAGTGTCTTGATACCGCagggtggacagacagacagttggtaGGAGATAGTGTCTTGATACCGCagggtggacagacagacagttggtaGGAGATAGTGTCTAGATACCGCagggtggacagacagacagacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCAGGGCCACagggtggacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCagggCCACagggtggacagacagacagacagacagttggtaGGAGATAGTGTCTAGATACCGCATGGgtggacagacatacagacagacagttggtAGGAGATAGTGTCTAGATACCACAGGGCCACAgggtgcacagacagacagttggtaGGAAATAAATAGACAGTGCCAGACAGACAGTTGGTAGGAAATAGATAGACAGTGCCTAGATACCTTCCTCTAAAGCCAGGAACACATTTAGAAtgagtcccaaacggcaccctattctcatagggtcctggtcaaagtagtgcactataaactgaataggctgccatttgggatgcatacttagccttttttttttttttaagtttctgTCAAATCTGAGGTGTGTCAATTTGGGATTTATCTCACCACTTGAGGTTTGAAAACGTCTGACAATCGTAGATGTTTGTGAAGCACTACTTTGAGACATGGGTGTTACTAACATTTGATACAGGATCAAAGTTGAAATGTACCTGCAGGAAATCAACTGTATATGTTTCTAATATATGAGAAAGGAAGTCAAACTCAATAGGACTTTTCTATTGAGAGAATGAGTCGAtagattatttattattattagctTATCAGCACCGTGTACTCTCACTGAGGACCTATAAGAAGCAGTTTCACCTTTGTCCCGCCCCCTTCTCACCAGTCACACACCTTTTCTCGTATGATTGACACTGCAGCTATCCACTCCCAACACTCCATCCACAacgttaaagcccaacactaatTACAAGAGGACTGGGGTCCGTTCAAGAGGGGGCGATGTTCTGACAAAATGTTTCTGATTTAGAAATGAGACGAGTGGACATGATTCTGTCCCAGAGGCCAGTCTATTCTACACAAGGTAGAAGTATTCATTAGGTACTGAACGGAAGAACAACAGACTGCAACGGGAAGAGACTACCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109125 lncRNA downstream 2709 88227636 ~ 88230342 (-) True LOC118966057
TU109118 lncRNA downstream 3582 88224741 ~ 88229469 (-) False LOC118966057
TU109122 lncRNA downstream 3582 88224741 ~ 88229469 (-) False LOC118966057
TU109116 lncRNA downstream 3582 88227636 ~ 88229469 (-) False LOC118966057
TU109117 lncRNA downstream 3582 88227636 ~ 88229469 (-) False LOC118966057
TU109145 lncRNA upstream 3328 88238000 ~ 88238331 (-) True G98514
TU109153 lncRNA upstream 19074 88253746 ~ 88254060 (-) True G98522
TU109160 lncRNA upstream 28801 88263473 ~ 88264499 (-) True G98528
TU109164 lncRNA upstream 34331 88269003 ~ 88269227 (-) True G98532
TU109172 lncRNA upstream 49539 88284211 ~ 88287080 (-) True G98539
XR_005053264.1 mRNA downstream 2709 88227888 ~ 88230342 (-) False LOC118966057
XM_036988142.1 mRNA downstream 30893 88178952 ~ 88202158 (-) False papolg
XR_005053261.1 mRNA downstream 30893 88178952 ~ 88202158 (-) False papolg
XR_005053262.1 mRNA downstream 30893 88178952 ~ 88202158 (-) True papolg
LOC118966733 mRNA downstream 68440 88159117 ~ 88164611 (-) True LOC118966733
XM_036988180.1 mRNA upstream 1909 88236581 ~ 88270978 (-) False LOC118936686
XM_036988175.1 mRNA upstream 1909 88236581 ~ 88270980 (-) True LOC118936686
XR_005053271.1 mRNA upstream 480201 88714873 ~ 88715334 (-) False LOC118966063
XR_005053270.1 mRNA upstream 480201 88714873 ~ 88715755 (-) False LOC118966063
XR_005053272.1 mRNA upstream 481646 88716318 ~ 88717077 (-) True LOC118966064
TU109132 other downstream 12247 88218829 ~ 88220804 (-) False G98510
TU109183 other upstream 79604 88314276 ~ 88314696 (-) True G98549
TU109256 other upstream 317302 88551974 ~ 88644067 (-) True G98616
TU109341 other upstream 542867 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other upstream 543232 88777904 ~ 88782029 (-) True LOC118966065
TU109555 other upstream 841175 89075847 ~ 89076238 (-) True G98878

Expression Profile