RNA id: XM_036988180.1


Basic Information

Item Value
RNA id XM_036988180.1
length 2065
RNA type mRNA
GC content 0.58
exon number 6
gene id LOC118936686
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88236581 ~ 88270980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGCCGTGACGTAGGGGTGCCTGCACAATCCAACATGGAGTAGCGAGCGATGGGGCTCTAGCGGGGCCACCCCTCGGCAACGCCAGTGCCCATTCAGCAACGCTGAACGGGCCGTCGAAAAACGGGCCCCCAGAATTTAGGAGGCACATGTTTTACTTCACCGTATTACCCTGAGGATTATAAACTTTCGGAGAGTCTTTATTTTACCTAAGCAACTGGTTGGCATGACAAGAAaatgacagcagagagagagagagacctactgtAGTCTCAGACTGAAGCAAAGAGCGCTGTGTATTCACACAAAGGCAGCGGAGAGATAGGCTTCTACGCGGAATAGAAGGGAAAGGACTGAGGATAGGTGTTGAAAAAAATGACGAGCAAAAAGCATGCACCCGCATTGGGATATCATTTCAGGTGAAACGAGAAAATGATAGAAGAAACACACCCAAGCGAtgACAGCTACATGGTGTGTGTAAACGCCGTGGTGATGATGAGGGATGATTCCAGTGGAGGCTGGTTGGTCCAGGACGGGGGGGCTCTGAGTAGAGTGGGAGTCTGCAGGGTCCTGCTCCCCGAGCTGGGGCTGGGACTCGCCCCCCTGGGTCGCTCCCACTTCCTCATCCATGGAGAACGTCTACGGGACAAACAGGTGATCCTGGAGTGTGCTCTGAGGAAGAACCTTGTGTACACCAAGGCCACGCCCACCTTCCACCATTGGATGGTGGAGGACAGGAGGTGTGGCCTGACGTTCCAGAGGCCTGCTGATGCTCGGGCCTTCGACAGGGGCGTACGGAAAGCCATTGAGGCCATggcagaagGCTCCACGACGTCCTCCTCAACACTCCAGAACGAGGCAGAACTGGGCGACGATGATGTGTTCACCAATGCCACAGACAGCTCGTCTAACTCCTCCTCCGAGAGACTGGAGCCCTGTCTGCAGCCACTGGACTCCTCCCCCCTCGCTGACTCATCCCACTTACACAACAACTGCATCCTGGGAAACGACCTCTACGAACCCTATAGGTTGTCAGACCACTACTTCCTAGATCTGCCTCTGCCCCGCATCCCTCGCCACGTCACCTTCCAGGACGACGAGGAGATCGTCAGGATCAACCCTCGGGAACGTTCCTGGGAGCTCCCCTCGGAATCCTCCTCCCGCTCGGAACTCCACATGGACCAACTAGAACGCTCCTGGCTCACGGGCTATGAGGACTACCGCCACGCCACCGTGCGCCACAAATACATCCGCCCGCCAGACGACTCTGAGTCCTATGTCCACTTCGCTAAGAGCGAGCCACACAAACACCACTATAGTTATCCCCTGGTTTCCACACCGGTAGATTCCTCCGACCCCAAACCTACCTTCAGACCTTTACCCAAGAGGCACCACTACGCCGGCTTGGGTTCGCAACACCGCCGTCCAGGGGATCAGGGCTTTGGTGGGGGCGTGGTCTCTACCCAGCCCCAGCCCCTCCTCCCTGGCTCGTCTGATGGACAGGACAAGAAGTCTGAGGAGGGCGGGGTTGGCGAGCGCCTGCAGTGCCAATACTGCGGCGAAACGTTCTACGGCGGTAACAACCGACGGGGGCGCTGCCAGGACGCGCCGGACCCGATCAGGGCGTGCGTCCGGCGGGTCAGCTGCATGTGGCTGGCCGACACACTGCTGTACCACTGCATGTCTGACCCGGAGGGGGACTACTCAGACCCCTGCTCCTGTGAGGGGGGTGGCGAGGGGAGGCTGGGCACACGCTGGGCAGCTCTGCTGGGGTTGTCCCTAGTGGCGCCGTGTCTCTGTCTGTACCCGCCCCTTCACGCCTGCCACCGGGCCGGGGTGGCGTGCGGGAGCTGCGGGGGCAGGCATGAAGCCTCAATGACATAAACCCCAAAAACacgtggaggggagaggggaaggagggggagagggagaagaagagcgGTCCTATGccccattttggttttgtggttttgttactctacagacagatgTGTATATACAGCGGTGGTGTGTTGTGGCTGCCATTTTGAAATGGTGTAAAGATTCATAAAGCTCCTTCTTGTgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109143 lncRNA downstream 1909 88233051 ~ 88234672 (-) True LOC118966058
TU109125 lncRNA downstream 6239 88227636 ~ 88230342 (-) True LOC118966057
TU109117 lncRNA downstream 7112 88227636 ~ 88229469 (-) False LOC118966057
TU109172 lncRNA upstream 13233 88284211 ~ 88287080 (-) True G98539
TU109191 lncRNA upstream 58146 88329124 ~ 88329342 (-) True G98556
TU109192 lncRNA upstream 59093 88330071 ~ 88330279 (-) True G98557
TU109194 lncRNA upstream 66842 88337820 ~ 88338034 (-) True G98559
TU109201 lncRNA upstream 127288 88398266 ~ 88398572 (-) True G98566
XR_005053265.1 mRNA downstream 2311 88231941 ~ 88234270 (-) False LOC118966058
XR_005053264.1 mRNA downstream 6239 88227888 ~ 88230342 (-) False LOC118966057
XM_036988142.1 mRNA downstream 34423 88178952 ~ 88202158 (-) False papolg
XR_005053261.1 mRNA downstream 34423 88178952 ~ 88202158 (-) False papolg
XR_005053262.1 mRNA downstream 34423 88178952 ~ 88202158 (-) True papolg
XR_005053271.1 mRNA upstream 443895 88714873 ~ 88715334 (-) False LOC118966063
XR_005053270.1 mRNA upstream 443895 88714873 ~ 88715755 (-) False LOC118966063
XR_005053272.1 mRNA upstream 445340 88716318 ~ 88717077 (-) True LOC118966064
XR_005053273.1 mRNA upstream 507339 88778317 ~ 88782119 (-) False LOC118966065
XM_036979551.1 mRNA upstream 952172 89223150 ~ 89270341 (-) False ghitm
TU109132 other downstream 15777 88218829 ~ 88220804 (-) False G98510
TU109183 other upstream 43298 88314276 ~ 88314696 (-) True G98549
TU109256 other upstream 280996 88551974 ~ 88644067 (-) True G98616
TU109341 other upstream 506561 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other upstream 506926 88777904 ~ 88782029 (-) True LOC118966065
TU109555 other upstream 804869 89075847 ~ 89076238 (-) True G98878

Expression Profile