RNA id: XM_036988247.1


Basic Information

Item Value
RNA id XM_036988247.1
length 1849
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118966069
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89018704 ~ 89020600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacacaaccacacacacacacacacacaaccacacacacacacacacacacttgagagATGCTGCACTTGTTTAGCTGCTTATATTCTCACTGTTGTTCTTTCTGGAGGTCACTGAGAAGTTGAGTAGAATATACAACAGCAACACTGTATCAGGAGTCACAGCAACCGGTTGGCTTGTAAATGCCTTTACAGCACCTCAAAGGGAGATTTGTGtcacttttgttgttgttgttgttgtttacacgtCTGTTGACATTCCAAGTAGATAATGAGTCGTCTTGATGAGCAATGTGGAGATCTTGTTCTACTGTCTTCCAATAGTATCTCTCAGATAAACTATAGGTCCACAACTCACCTTGTTGCTGCAACATGATAGTACATTATCTTTACACTGCATGCTGTATATTAGTACCTTGTGTTCTGCACCTTTACCCAGAAATGAGAATAACTCCAACACTAAGCAGGTTTCCATCCAAACTCTTTATGTGAGTCGGGAAAGAAAATGTCACCACAGACCTGATGGAAACGGCAAATTTGTCAGTGAACTtgtccaaatgtcgacaaaacaataTATGCTAGACAAGATGGGATATGAGATGGGTGGTAAAAGTCTAAAGTGATGATGCTCCTTACCATTCAATATCAAGGGCTTTATTCTGgtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGGCTTTATTCTGGTGACAGGATGATGCTCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGgctttattctggtgacatgatggtGCTCCTTACCATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACTATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGgctttattctggtgacatgatgatgctCCTTACCATTCAATATCAAGGgctttattctggtgacatgatgatcgatgcttcgctgccgtttgacaaataagaAAGAAATCTTTCTCTTTTgcccataataatctcatcatgtaggctataggcctacccGCATCTGTGAGCTAGAACATGTGTCAAAACCAGAGTGGGACACATTTGCTATACAACGCAACAATTTGTAGTGACAAAgtcatcagtagagttgaaaatgttaccttttatttaactaggcaagttccagaacaaattcttatttacaatgacggccaaacccagacgacgctgtgcCAGTTGTGCTccaccctgtgggactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109507 lncRNA upstream 399 89013295 ~ 89018305 (+) True si:dkey-78p8.1
TU109510 lncRNA upstream 837 89014265 ~ 89017867 (+) True G98839
TU109479 lncRNA upstream 40868 88977619 ~ 88977836 (+) True G98814
TU109473 lncRNA upstream 54569 88963915 ~ 88964135 (+) True G98808
TU109470 lncRNA upstream 57753 88960473 ~ 88960951 (+) True G98805
TU109508 lncRNA downstream 358 89020958 ~ 89021592 (+) True G98837
TU109524 lncRNA downstream 2194 89022794 ~ 89023079 (+) True G98847
TU109528 lncRNA downstream 6207 89026807 ~ 89027094 (+) True G98851
TU109530 lncRNA downstream 8538 89029138 ~ 89029739 (+) True G98853
TU109531 lncRNA downstream 9426 89030026 ~ 89030264 (+) True G98854
XM_036988242.1 mRNA upstream 434 89007456 ~ 89018270 (+) False si:dkey-78p8.1
XM_036988231.1 mRNA upstream 26244 88981098 ~ 88992460 (+) True LOC110518194
XM_036988237.1 mRNA upstream 26298 88981098 ~ 88992406 (+) False LOC110518194
XM_036990040.1 mRNA upstream 188452 88829551 ~ 88830252 (+) True LOC118966734
XM_036988196.1 mRNA upstream 290511 88725598 ~ 88728193 (+) False LOC118966059
XM_036988250.1 mRNA downstream 250208 89270808 ~ 89288624 (+) False LOC110510724
XM_036988262.1 mRNA downstream 567765 89588365 ~ 89663139 (+) False LOC110514249
XM_036988276.1 mRNA downstream 567765 89588365 ~ 89663139 (+) False LOC110514249
XM_036988279.1 mRNA downstream 567765 89588365 ~ 89663139 (+) False LOC110514249
XM_036988283.1 mRNA downstream 567765 89588365 ~ 89663139 (+) False LOC110514249
TU108836 other upstream 274291 88637050 ~ 88744413 (+) True LOC118966060
TU108796 other upstream 368910 88646456 ~ 88649794 (+) True LOC118966062
TU108810 other upstream 375253 88641013 ~ 88643451 (+) False LOC118966061
TU108569 other upstream 874263 88131038 ~ 88144441 (+) False G98104
TU108570 other upstream 874263 88131038 ~ 88144441 (+) False G98104
TU109662 other downstream 250296 89270896 ~ 89287767 (+) True LOC110510724
TU109864 other downstream 438135 89458735 ~ 89459071 (+) True G99160
TU109978 other downstream 638661 89659261 ~ 89660421 (+) False G99246
TU110229 other downstream 819268 89839868 ~ 89841791 (+) True G99440
TU110260 other downstream 887172 89907772 ~ 89908434 (+) True G99466

Expression Profile