RNA id: TU109710


Basic Information

Item Value
RNA id TU109710
length 977
RNA type TUCP
GC content 0.43
exon number 3
gene id ghitm
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89223150 ~ 89270371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtCTCCACCTCCTCTATCGgCTCAATGTTCCTGCCCCCTACCTCAGCGATGGGAGCAGGCCTCTACTCCATCGCTATCTACGGAGGTCTGGTCCTCTTCAGCATGTTCCTGCTCTACGACACCCAGAAGGTCATCAAGAGGGCGGAGACGTACCCCATGTACGGGATGCAGAAATACGACCCCATCAACTCGTGCATGGGGATCTACATGGACACTCTGAACATCTTCATGAGGATGGTGATGATTCTGTCTGGCGGAGGAAACAGAAAGaaatgaagacgttccagtctgacTTTACATCTACGTTAAACCTTCAACCTTCCACACAGTTGAACAACAACGATATGTTCTACAATTAGCACCGTACATCAGCTGTTACCTACTTTTTAGTTTGAAAACGTATTTTCAACTGACACAATAAAAAAATGTGTTGCTTTTGTGTGAAGAAGAGGATTGCAATTTCCTAGAGCATATTGACACTCATCCAAGTAAGGACGACATCTTGCTCTGTTCCATATTCAGAAtgttaaaaaatatgtttttgtcttGATTCTGAGGGAGGCATATTTTTATTTAAAGTCAGGATTGTTAATGGGGATATCTGTCAACATCACAGATTGTCCCTCAGTCTCATCCTCTTAATTGTTcctttatattttatatatatttattttcacttGAGGTGGGTGTTCCCATTCCTGGCCAGCAAGACAAAGTTGGGCAAACATCATATTTATATCATCCCTCAACCTTGTACTTCTTCTAGCCTCCACACATACAATACGTGTGACTATGTGCTTAACTCCTTGACAGAGACTGAACTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGTGTTGTATCGGGCCGAGCCTTGGATGGGTGGTGCTTTGACGTGTTGTTTCTGTTAGAATGAAAGTGATTGAATGTGATCAACGCTGTTCTGGTATCATTCAATAAAAGTGAAAGAGAATGCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109651 lncRNA downstream 5875 89216910 ~ 89217275 (-) True G98971
TU109648 lncRNA downstream 7111 89215390 ~ 89216039 (-) True G98968
TU109647 lncRNA downstream 9275 89213655 ~ 89213875 (-) True G98967
TU109646 lncRNA downstream 11490 89211460 ~ 89211660 (-) True G98966
TU109642 lncRNA downstream 15273 89207546 ~ 89207877 (-) True G98962
TU109737 lncRNA upstream 42061 89294149 ~ 89294377 (-) True G99045
TU109749 lncRNA upstream 60175 89312263 ~ 89315981 (-) True G99057
TU109750 lncRNA upstream 64202 89316290 ~ 89317055 (-) True G99058
TU109756 lncRNA upstream 74870 89326958 ~ 89329993 (-) True G99063
TU109762 lncRNA upstream 85466 89337554 ~ 89337791 (-) True G99069
XR_005053273.1 mRNA downstream 441031 88778317 ~ 88782119 (-) False LOC118966065
XR_005053272.1 mRNA downstream 506073 88716318 ~ 88717077 (-) True LOC118966064
XR_005053270.1 mRNA downstream 507395 88714873 ~ 88715755 (-) False LOC118966063
XR_005053271.1 mRNA downstream 507816 88714873 ~ 88715334 (-) False LOC118966063
XM_036988175.1 mRNA downstream 952170 88236581 ~ 88270980 (-) True LOC118936686
XM_036988298.1 mRNA upstream 545824 89797912 ~ 89803793 (-) False fbxl15
XR_005053290.1 mRNA upstream 545824 89797912 ~ 89803793 (-) False fbxl15
XM_036988407.1 mRNA upstream 648250 89900338 ~ 89902504 (-) False LOC118966075
XM_036988401.1 mRNA upstream 648250 89900338 ~ 89902518 (-) True LOC118966075
XM_036988448.1 mRNA upstream 660210 89912298 ~ 89920373 (-) False LOC110519290
TU109555 other downstream 146912 89075847 ~ 89076238 (-) True G98878
TU109341 other downstream 441121 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other downstream 441121 88777904 ~ 88782029 (-) True LOC118966065
TU109256 other downstream 579083 88551974 ~ 88644067 (-) True G98616
TU109183 other downstream 908454 88314276 ~ 88314696 (-) True G98549
TU109727 other upstream 35126 89287214 ~ 89290056 (-) True G99035
TU110424 other upstream 705304 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 711785 89963873 ~ 89964205 (-) True G99602
TU111315 other upstream 1375445 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 1375880 90627968 ~ 90736095 (-) False G100197

Expression Profile