RNA id: XR_005053290.1


Basic Information

Item Value
RNA id XR_005053290.1
length 2141
RNA type mRNA
GC content 0.45
exon number 7
gene id fbxl15
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89797912 ~ 89803793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTGGAACGTACCCAGTGACCGAACCCGGAAGTTTGGGAATACAGCCAAAAAAGCTGTCGCTGATCCAGCAAGCTTCAACCAAGGCTCACTAGATAGCTAACAAACTGTCGTTGTACATGTAGCTATCTCGCATATTTCTGCGGATTCAAAATGGATGCGGAAACAGAGTGTTGCAAATGTCACCTCTTGGATTTGCCCtgggaggatgtgttggtaacGCACATCTTCTGCTACCTGCCATTACGCCAGCTGGTGCGGCTACAGAGAGTGAGCAAGCAGTTCTATGCCCTCATCCAGGTGTACCTGGCCAACTGTCGCACCTTTGACCTCACACAGATAGGGCCTAGCCTTCCCAAGGAGGCATTCTGCAACATACTAAGGGACAACAAAGTCCTACAGAACTTGTCCGTCCAGAACTGCTCCGATTGGGTGACAGACACGGagctgctgcctgtgattggccAGAACCAGCACCTGCTGAGAGTAGACATGAGGGGATGTGACCGGCTGACCCGTCACTCCTTAGTAGCGGTGTCGTTGAGCTGCACACACCTGCAGTACCTGGGCCTGGCCCACTGTGAATGGGTGGACAGCCTGTCCATACGCAGCCTGGCTGACCACTGTGGGGGCCTGAGGTCCATCGACCTGACTGCCTGCCGCCAGCTCAAAGACGAGGCCATCTGCTATTTATCCAAGAAGTGTCTGAAGATGAGGTCGCTGTCTGTGGCGGTCAACGCCAACATTACAGACGTGTCTGTGGAGGAAGTGGCCAAGAACTGCAGGGAGCTGGAACAGCTGGACCTGACAGGCTGCCTGAGGGTTAGGAACGACTCCATCAGgacTGTTGCAGAGTACTGCCCCAAGCTGCAGTCTCTGAAGGTGAACCACTGTCACAACGTGACTGAGTCCAGTCTGGACCCCCTGCGGAAGAGGAACGTTGAGATTGACGTGGAGCCACCACTACAGAGGGCCCTTGTGCTGCTGCAGGATGTGGTGGGGTTCGCTCCCTTCATCAACCTCCAGATCTAGGCTAAAGGACATCTGTATTACTCATCCAACCAATTGGAAACAGGTAGGCTAGCTAGGCTAAAGGACATCTGTATTACTCATCCAACCAATTGGAAACAGgTTTTCCTCCACTAGGAGAATGACCTGTTTCAATTGAAACACACCCTGTGTATGCTGGGACATCAATTAAGCAATtcaagaaacaaacaaaaacggATGTATATGGGAAATATATTGTGAAACTTGTCTCTTTTATTTATTACAGTGATGTTGCAGATTATAATTATGCACTTAGGAAAAGACTGAAGGAAGCCGTGCACTTTTCAGTAACGCTGTCACGAGTCCAAAAGATTCCTGCGGTATTTAATTTGTATCTCATCACACACTAACAACACTTTAGATGGTCTTGTGATCTATAGCTTTTAAAAAAAGGACCGTTCCAACCAAAGGAGAAGCCGTAACTATAAGAGCATATTGTTGAGTTTTTGTGTGTTTATTGACATGTTACTCTGCTAAGTGTACGATACATACACCTCTAAATGTCTCATACAGATTAGCTTGGTAAACTTTTATATATTAGGTAAGTAAATGTTTTATATTCGGTAAATAAACGTTTTATATTGTGTGTTTGCATTGACCTTACATTGACTGAAACTCTTCTCTTCGTACAATATTATTTTTAATGGTTAGTTGAGCTGATCAGTCTTGGCCCAGCCCACCATTTTGTTAAAATGTGTCATTTTAACATGTTATAAGACTCTGTATACCGTGATCTTGAACTCCTCCTTTTGCCTGTTTACTTCAGGAAATCTGCTTTTCTATGTTGAATGTCTGAAAACATGTAGGTCTAGTTGTAAAACGACATTTTAGTTCCATAAGCTTTCTCATATGGTAGGCTATGAAGAAGGACACGTTTCTGTTTGTAATATGTGACTATTGAAAAACAATCTCAGTTTTACATCTGGGAAGAAACATGAGAGGAACATGCAGTGTAAAGTCTATGTTAATGTGATCACCCCACGTTGTATTGTTCCACTGAGGAGTTACAGTATTGAAACTAGTTGTATTCCATGTGTAATAAGGGACCATCCAATCATGTCTATCTGAGAATATAAAGCACTATCTATAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110084 lncRNA downstream 127759 89669698 ~ 89670153 (-) True G99324
TU110083 lncRNA downstream 130375 89666659 ~ 89667537 (-) True G99323
TU110077 lncRNA downstream 144638 89652797 ~ 89653274 (-) True G99317
TU110073 lncRNA downstream 150036 89647250 ~ 89647876 (-) True G99313
TU110031 lncRNA downstream 234234 89563426 ~ 89563678 (-) True G99275
TU110363 lncRNA upstream 29967 89833760 ~ 89834052 (-) True G99549
TU110371 lncRNA upstream 39749 89843542 ~ 89845164 (-) False G99555
TU110372 lncRNA upstream 39749 89843542 ~ 89845164 (-) True G99555
TU110379 lncRNA upstream 58768 89862561 ~ 89862830 (-) True G99562
TU110383 lncRNA upstream 60825 89864618 ~ 89872837 (-) True G99565
XM_036978480.1 mRNA downstream 527541 89223150 ~ 89270371 (-) False ghitm
XM_036979087.1 mRNA downstream 527556 89223150 ~ 89270356 (-) False ghitm
XM_036979551.1 mRNA downstream 527571 89223150 ~ 89270341 (-) False ghitm
NM_001124503.2 mRNA downstream 530725 89223688 ~ 89267187 (-) False ghitm
XR_005053273.1 mRNA downstream 1015793 88778317 ~ 88782119 (-) False LOC118966065
XM_036988407.1 mRNA upstream 96545 89900338 ~ 89902504 (-) False LOC118966075
XM_036988401.1 mRNA upstream 96545 89900338 ~ 89902518 (-) True LOC118966075
XM_036988448.1 mRNA upstream 108505 89912298 ~ 89920373 (-) False LOC110519290
XM_036988442.1 mRNA upstream 108505 89912298 ~ 89920450 (-) False LOC110519290
XM_036988457.1 mRNA upstream 108505 89912298 ~ 89920458 (-) False LOC110519290
TU109727 other downstream 507856 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 545824 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 721674 89075847 ~ 89076238 (-) True G98878
TU109341 other downstream 1015883 88777539 ~ 88782029 (-) False LOC118966065
TU110424 other upstream 153599 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 160080 89963873 ~ 89964205 (-) True G99602
TU111315 other upstream 823740 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 824175 90627968 ~ 90736095 (-) False G100197
TU111268 other upstream 825879 90629672 ~ 90858972 (-) False G100197

Expression Profile