Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU110333 |
| length | 938 |
| lncRNA type | sense_over |
| GC content | 0.37 |
| exon number | 4 |
| gene id | fbxl15 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 89797912 ~ 89803793 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0000086 | G2/M transition of mitotic cell cycle | biological_process |
| GO:0030513 | positive regulation of BMP signaling pathway | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0030282 | bone mineralization | biological_process |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019005 | SCF ubiquitin ligase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU110084 | lncRNA | downstream | 128153 | 89669698 ~ 89670153 (-) | True | G99324 |
| TU110083 | lncRNA | downstream | 130769 | 89666659 ~ 89667537 (-) | True | G99323 |
| TU110077 | lncRNA | downstream | 145032 | 89652797 ~ 89653274 (-) | True | G99317 |
| TU110073 | lncRNA | downstream | 150430 | 89647250 ~ 89647876 (-) | True | G99313 |
| TU110031 | lncRNA | downstream | 234628 | 89563426 ~ 89563678 (-) | True | G99275 |
| TU110343 | lncRNA | upstream | 1330 | 89801470 ~ 89802433 (-) | True | G99531 |
| TU110363 | lncRNA | upstream | 33620 | 89833760 ~ 89834052 (-) | True | G99549 |
| TU110371 | lncRNA | upstream | 43402 | 89843542 ~ 89845164 (-) | False | G99555 |
| TU110372 | lncRNA | upstream | 43402 | 89843542 ~ 89845164 (-) | True | G99555 |
| TU110379 | lncRNA | upstream | 62421 | 89862561 ~ 89862830 (-) | True | G99562 |
| XM_036978480.1 | mRNA | downstream | 527935 | 89223150 ~ 89270371 (-) | False | ghitm |
| XM_036979087.1 | mRNA | downstream | 527950 | 89223150 ~ 89270356 (-) | False | ghitm |
| XM_036979551.1 | mRNA | downstream | 527965 | 89223150 ~ 89270341 (-) | False | ghitm |
| NM_001124503.2 | mRNA | downstream | 531119 | 89223688 ~ 89267187 (-) | False | ghitm |
| XR_005053273.1 | mRNA | downstream | 1016187 | 88778317 ~ 88782119 (-) | False | LOC118966065 |
| XM_036988407.1 | mRNA | upstream | 100198 | 89900338 ~ 89902504 (-) | False | LOC118966075 |
| XM_036988401.1 | mRNA | upstream | 100198 | 89900338 ~ 89902518 (-) | True | LOC118966075 |
| XM_036988448.1 | mRNA | upstream | 112158 | 89912298 ~ 89920373 (-) | False | LOC110519290 |
| XM_036988442.1 | mRNA | upstream | 112158 | 89912298 ~ 89920450 (-) | False | LOC110519290 |
| XM_036988457.1 | mRNA | upstream | 112158 | 89912298 ~ 89920458 (-) | False | LOC110519290 |
| TU109727 | other | downstream | 508250 | 89287214 ~ 89290056 (-) | True | G99035 |
| TU109710 | other | downstream | 546218 | 89223150 ~ 89252088 (-) | True | ghitm |
| TU109555 | other | downstream | 722068 | 89075847 ~ 89076238 (-) | True | G98878 |
| TU109341 | other | downstream | 1016277 | 88777539 ~ 88782029 (-) | False | LOC118966065 |
| TU110424 | other | upstream | 157252 | 89957392 ~ 89957916 (-) | True | G99595 |
| TU110433 | other | upstream | 163733 | 89963873 ~ 89964205 (-) | True | G99602 |
| TU111315 | other | upstream | 827393 | 90627533 ~ 90684839 (-) | False | G100197 |
| TU111345 | other | upstream | 827828 | 90627968 ~ 90736095 (-) | False | G100197 |
| TU111268 | other | upstream | 829532 | 90629672 ~ 90858972 (-) | False | G100197 |
