RNA id: XM_036988407.1


Basic Information

Item Value
RNA id XM_036988407.1
length 1839
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118966075
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89900338 ~ 89902518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATCTGCAGAGCTGAGTAGCTGTGCGACGGGAGAGTTACATGTAAAGTCGGCTTGACTGGGAAGCCTTTGTCCTCAATCGCagcaacaaaaataaataaactggaTTAGCAACAGAAAGAACATTTCCACGTTAGCAACATATCTTTGTAAGTATCATTACTGTCGCTGGCTATTGTTTCAACCTATTGTCTCGACCGTCAACTTTGAACAAGGGAATGAAaggactaacgttagctagcttagtCAACTGCCTTTCCTCCACTCGAACCTGATCTATGATCCCTGAGACTTGGAAAGTTACAAGAAGTTGAACACTTGACCAGTTGGAAATGATGCATGCACTTCCTACAACCATGATGGTCCATGATTTAGATAtcttcagctcatctccttctccAATGGACGCCACTGCCAAAAGGTCTTCATGGGGGAAACTGGTGCAGAAGTTAACGGACTTCAGTGGAGACGGCCAGAGCAGCCGTCACAGTTTAGACTCCGACTCAGACAATGGCAGCAGGACTGATCTCTCAGACTCCGGGTTTGACTTTCCCTCTATCTCCTCATCTGATGACTTCAGCAACGTGCTATATGAGGATCTCCTCTCAATGGAGGAGACCCTTCTGAAAGAACTTGTGCACCTAATTGCCAGTAGCTTAAGGGAAGCCAAAGACGGTGCCCTTAGATGTTCGAAACTACTCATCCCTGAGAAGCTTCTAGAACACATAGGCCAAGAGCTCCTTCACCTGGCGGCCAGCGAGCCCTGTGGCCTGAGGGGGGCTCTCATAGACCTCTGTGTGGAACAGGGGGAGGTGTGTCAGAGTATGGAACAGATCGCGGTGGATCCATATCTCGTCCCTACCTTCCAGCTCACACTGGTGCTGAGGCTCGATTCTGGAGGACTGTGGCCCAAAATCCAAGGGCTTTTCTCCACGAAGTCTCCATCCAGTCCCGTAAAGAGACAGGCGATTAGACTGAGCACGGGCTTCAGAGTGATCAAGAAGAAACTGTACAGCTCTGAAGAGTTGCTCATTGAAGAATGCTGAAAGAAACCAAAGAGACTTTCTTTAGATATTTTTCTAATAAACCTTGTACCAAGTGTCCTACCTACAACGCTCATCAGAGCCCTAGTGATCAACGTTTGGGATTCTAGTCAAATGTATGATTTTTCTAGGACATTTTCTTAACTGTTAAGATGAATCGCCGATTACTTTGCTATGTTCATTATTTGCCGATTGGCGTTCCTGTGTAGGGGAGCCACCGTAAATGGTACGTGGAAAGTTAATAAGAACAACTATTGTGCTTAAGAGAATGGAACAGGGAGCCACACAGTAAATGGTACGTGAGTAGTTTAGTGTGCTTAAGAGAATGGTGTTAACTCAAACACTGAAAAATGAAGTTTCTGGCACTTTTGCAAACCACTAATATCTATTTTTATACAAGATGGGTGGTTTGGTTTTCCATTTATTATTAAAAATGTTTACCTGTTTCTATTGAAACCAGACAATGGCAGCTAGCTGTGTGGTAATGTTTGTATGTAGCCATTTAGAAACTGTGGTAATATAATTTTTTTCTTCATGGCATTTCATTGTACACTATGGTGAGGGGACCAGATTGACATGTTTGGTTAGAGACCAACATTACTTAGCAGTACTGGCTTCTCCGTCCATTCTGTGAACCACAGGTCAGTTTACTTGATTCTTTATTTCCGGTTTCGACTGGATTGTCCTCCTGCATACTCATCTGTGCATCGTTTTATTTGATATTCAAATATCTGTACTGTCTTGATACTTTCCATTTTATGAACCTCGgacaataaaatattttttttttacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110393 lncRNA downstream 12414 89887429 ~ 89887924 (-) False G99571
TU110395 lncRNA downstream 12414 89887429 ~ 89887924 (-) True G99571
TU110391 lncRNA downstream 14295 89883846 ~ 89886043 (-) True G99570
TU110324 lncRNA downstream 20411 89796656 ~ 89879927 (-) True G99521
TU110321 lncRNA downstream 25434 89873759 ~ 89874904 (-) True G99518
TU110404 lncRNA upstream 1315 89903819 ~ 89904441 (-) False G99579
TU110407 lncRNA upstream 1315 89903819 ~ 89904441 (-) True G99579
TU110410 lncRNA upstream 5334 89907838 ~ 89908447 (-) True G99581
TU110412 lncRNA upstream 6963 89909467 ~ 89909729 (-) True G99583
TU110314 lncRNA upstream 9794 89912298 ~ 89920318 (-) True LOC110519290
XM_036988298.1 mRNA downstream 96545 89797912 ~ 89803793 (-) False fbxl15
XR_005053290.1 mRNA downstream 96545 89797912 ~ 89803793 (-) False fbxl15
XM_036978480.1 mRNA downstream 629967 89223150 ~ 89270371 (-) False ghitm
XM_036979087.1 mRNA downstream 629982 89223150 ~ 89270356 (-) False ghitm
XM_036979551.1 mRNA downstream 629997 89223150 ~ 89270341 (-) False ghitm
XM_036988448.1 mRNA upstream 9794 89912298 ~ 89920373 (-) False LOC110519290
XM_036988442.1 mRNA upstream 9794 89912298 ~ 89920450 (-) False LOC110519290
XM_036988457.1 mRNA upstream 9794 89912298 ~ 89920458 (-) False LOC110519290
XM_036988479.1 mRNA upstream 206792 90109296 ~ 90115842 (-) True LOC118936688
XM_036988484.1 mRNA upstream 213997 90116501 ~ 90140061 (-) False LOC110515022
TU109727 other downstream 610282 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 648250 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 824100 89075847 ~ 89076238 (-) True G98878
TU109341 other downstream 1118309 88777539 ~ 88782029 (-) False LOC118966065
TU110424 other upstream 54888 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 61369 89963873 ~ 89964205 (-) True G99602
TU111315 other upstream 725029 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 725464 90627968 ~ 90736095 (-) False G100197
TU111268 other upstream 727168 90629672 ~ 90858972 (-) False G100197

Expression Profile