RNA id: LOC118966735


Basic Information

Item Value
RNA id LOC118966735
length 3638
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC118966735
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90645978 ~ 90657019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgagagaggtacAGGATAGAGaccttcTAGAGAAGTCCAGAGTGTCCTTGCAGCTTCCCGATGAGAGAGGTTACCACATCTTCTTCCTGATGATGACCAATCACAAACCTGACATTATTGAAATGTCACTCATCACCACCAACCCCTACGACTTCCCCATGTGCAGTCAGGGTCAGATCACTGTGGCCAGCATCAACGACAAGGAAGAGCTGGATGCCACAGACGATGCCATTACAATCCTGGGCTTCACTAATGATGAGAAGATGAGCATCTACAAGCTGACAGGAGCTGTCTGCACCATGGCAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTGGCTGATAAAATCGGCTACCTGCTGGGCCTGAACTCAGCTGAGATGCTGAAGGCTCTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTATGTGACCAAGGGACAGACTGTGCCTCAGGTTAATAACTCAGTCTCGGCTCTGGCCAAGTCCATCTATGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAACGAGATGTTGGACACCAAGAATCCAAGGCAGTTCTACATCGGTGTGCTCGACATTGCCGGGTTTGAGATCTTTGACTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAACAAGAGGAGTACAAGAAGGAGGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTTCAGACACTTCCTTCAAGAACAAGCTGTATGACCAGCATCTTGGTAAAAACAAGGCATTTGAGAAGCCCAAGCCAGCCAAAGGCAAGGCAGAGGCCCACTTCTCCCTGGTGCACTATGCCGGCACTGTGGACTACAACATCACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGACTCAGTTCTTCAGCTGTACGGGAAGTCTTCAGTCAAACTGATGGCAACCCTGTATGTCGCTGCCCCACCTGAGGATACAACCAAGAAAGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCCTCCCAATTCAGGGAGAACTTACATAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTACGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTTCTGGTTATCCACCAGCTCAGGTGTAATGGTGTTCTGGAGGGTATCAGGATCTGCAGGAAGGGCTTCCCCAGCAGAATCATCTATGCTGACTTCAAGCAGAgGTACAAAATACTGAATGCCAGTGTCATCCCCGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGgtccattgatgtgaatcacgaggactacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTgtcctggaggagatgagagatgagaagcTGGCCTCTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGGAGAGAGTTCACcaagatgatggagaggagAGATTCCGTCTTCACCATCCAGTACAACATCCGTTCATTCATGAATGTGAAAACCTGGCCATGGATGAAGTTGTACTTCAAGATCAAGCCCCTGCTGCAGAGCGCTGAGACTGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGAGAAGATGACGTCGGACTTGGCCAAGGCTCTGGCCAAGAAGAAGGAGTTGGAGGAGAAGATGGTGGCCATGGTGCAGGAGAAGAATGACCTGGCGCTTCAAGTCGCATCTGATTCAGAGAATCTGAACGATGCTGAGGAAAGGTGCGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACTGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAAGAAGCTGGAGGACGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCTAGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAAGCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGCTCCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAGTCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACCACCCAGCTCCTCAGCAAGATAGAGGATGAGCAGTCTCTGGGAGCTCAGCTGCAGAAGAAGATCAAGGAACTCcagGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCCAAGGTTGAGAAGCAGAGGGACGATCTCTCCAGGGAACTTGAAGAGATCAGCGAGAGACTGGAGGAGGCCGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCTGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGCTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGTCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagagaCTGATTGAGGAGGAGGTCAAGGCTAAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGATTGTGATCTCCTGAGAGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAGCGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAACGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCAAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCCATGGCCGCCAACCAATATTTGAAACTGGTATCATTTCCTATTTATTATTCCTCCAGTGGTGATCTTTTGTTTTGGACAGGCAGACCAGTTGTATAAGTGAAGcatttagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111384 lncRNA downstream 63754 90581994 ~ 90582224 (-) True G100216
TU111383 lncRNA downstream 64592 90581164 ~ 90581386 (-) True G100215
TU111375 lncRNA downstream 69726 90575532 ~ 90576252 (-) True G100207
TU111259 lncRNA downstream 80034 90564801 ~ 90565944 (-) False G100192
TU111260 lncRNA downstream 80034 90564801 ~ 90565944 (-) True G100192
TU111403 lncRNA upstream 15246 90672265 ~ 90768398 (-) False G100227
TU111344 lncRNA upstream 30494 90687513 ~ 90796029 (-) False G100197
TU111355 lncRNA upstream 31055 90688074 ~ 90740440 (-) True G100198
TU111431 lncRNA upstream 46325 90703344 ~ 90755360 (-) True G100247
TU111402 lncRNA upstream 66533 90723552 ~ 90768876 (-) False G100227
XM_036988548.1 mRNA downstream 43204 90548240 ~ 90602774 (-) False LOC110531748
XM_036988550.1 mRNA downstream 43204 90548240 ~ 90602774 (-) False LOC110531748
XM_036988559.1 mRNA downstream 43204 90548240 ~ 90602774 (-) False LOC110531748
XM_036988544.1 mRNA downstream 43204 90549203 ~ 90602774 (-) False LOC110531748
XM_036988556.1 mRNA downstream 43204 90549208 ~ 90602774 (-) True LOC110531748
XM_036990066.1 mRNA upstream 36560 90693579 ~ 90695233 (-) True LOC118966736
XM_036990069.1 mRNA upstream 38262 90695281 ~ 90696935 (-) True LOC118966737
XM_036990074.1 mRNA upstream 88374 90745393 ~ 90746606 (-) True LOC118966738
XM_036990078.1 mRNA upstream 89633 90746652 ~ 90748391 (-) True LOC118966739
XM_036990082.1 mRNA upstream 146305 90803324 ~ 90813931 (-) True LOC110513773
TU110433 other downstream 681773 89963873 ~ 89964205 (-) True G99602
TU110424 other downstream 688062 89957392 ~ 89957916 (-) True G99595
TU109727 other downstream 1355922 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 1393890 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 1569740 89075847 ~ 89076238 (-) True G98878
TU111289 other upstream 29655 90686674 ~ 90738197 (-) False G100197
TU111282 other upstream 38314 90695333 ~ 90748416 (-) False G100197
TU111325 other upstream 124001 90781020 ~ 90782397 (-) False G100197
TU111293 other upstream 146426 90803445 ~ 90856566 (-) False G100197
TU111298 other upstream 146426 90803445 ~ 90856566 (-) False G100197

Expression Profile