RNA id: XM_036990066.1


Basic Information

Item Value
RNA id XM_036990066.1
length 1041
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC118966736
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90693579 ~ 90695233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGACCCTTTTTCTAGGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCCAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGACTGGAGGAGGCCGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCAGCCGCTCTGCGCAAGAAGCAGACCGACAGTGTGGCTGAGCTCGGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCTGTCGCCAAGACTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGCTCGTCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGCCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagagaCTGATTGAGGAGGAGGTCAAGGCTAAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGACTGTGATCTCCTGAGAGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAGCGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAACGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCAAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctGATGATTGACGTTGAGGGAGCCAACGCCATGGCCGCCAACCAATATTTGAAACTGGCAGACCAGTTGTATAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111373 lncRNA downstream 4108 90638401 ~ 90689471 (-) True G100205
TU111291 lncRNA downstream 5825 90636566 ~ 90687754 (-) False G100197
TU111307 lncRNA downstream 5825 90636566 ~ 90687754 (-) False G100197
TU111336 lncRNA downstream 8204 90628291 ~ 90685375 (-) False G100197
TU111286 lncRNA downstream 11750 90625080 ~ 90681829 (-) False G100197
TU111431 lncRNA upstream 8111 90703344 ~ 90755360 (-) True G100247
TU111402 lncRNA upstream 28319 90723552 ~ 90768876 (-) False G100227
TU111358 lncRNA upstream 36840 90732073 ~ 90776694 (-) True G100199
TU111367 lncRNA upstream 40993 90736226 ~ 90780709 (-) False G100202
TU111368 lncRNA upstream 40993 90736226 ~ 90780709 (-) True G100202
LOC118966735 mRNA downstream 36560 90645978 ~ 90657019 (-) True LOC118966735
XM_036988548.1 mRNA downstream 90805 90548240 ~ 90602774 (-) False LOC110531748
XM_036990069.1 mRNA upstream 48 90695281 ~ 90696935 (-) True LOC118966737
XM_036990074.1 mRNA upstream 50160 90745393 ~ 90746606 (-) True LOC118966738
XM_036990078.1 mRNA upstream 51419 90746652 ~ 90748391 (-) True LOC118966739
XM_036990082.1 mRNA upstream 108091 90803324 ~ 90813931 (-) True LOC110513773
XM_036988624.1 mRNA upstream 224762 90919995 ~ 90969586 (-) False LOC118936689
TU111315 other downstream 8740 90627533 ~ 90684839 (-) False G100197
TU110433 other downstream 729374 89963873 ~ 89964205 (-) True G99602
TU110424 other downstream 735663 89957392 ~ 89957916 (-) True G99595
TU109727 other downstream 1403523 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 1441491 89223150 ~ 89252088 (-) True ghitm
TU111282 other upstream 100 90695333 ~ 90748416 (-) False G100197
TU111325 other upstream 85787 90781020 ~ 90782397 (-) False G100197
TU111293 other upstream 108212 90803445 ~ 90856566 (-) False G100197
TU111298 other upstream 108212 90803445 ~ 90856566 (-) False G100197
TU111318 other upstream 159722 90854955 ~ 90856343 (-) True G100197

Expression Profile