RNA id: XM_036990074.1



Basic Information


Item Value
RNA id XM_036990074.1
length 742
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC118966738
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90745393 ~ 90746606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCCTGACCCTTTTTCTAGGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCCAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGACTGGAGGAGGCCGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCTGCCGCTCTGCGCAAGAAGCAGGCCGATAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTTTCCAGCAACATGGAGGCTGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGCTCGCCAAGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGCCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCAGCAGGTGGGGGAGCTGAAGAGACTGATTGAGGAGGAGGTCAAGgcactgtgttatgagGTAGAgcacacggtgtctccagtgcgctattCTAGCCCGGAGCGCACCAGCTCCTCGgattggccgggctag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111354 lncRNA downstream 4270 90637738 ~ 90741123 (-) False G100198
TU111355 lncRNA downstream 4953 90688074 ~ 90740440 (-) True G100198
TU111373 lncRNA downstream 55922 90638401 ~ 90689471 (-) True G100205
TU111291 lncRNA downstream 57639 90636566 ~ 90687754 (-) False G100197
TU111307 lncRNA downstream 57639 90636566 ~ 90687754 (-) False G100197
TU111329 lncRNA upstream 3763 90750369 ~ 90773636 (-) False G100197
TU111372 lncRNA upstream 4540 90751146 ~ 90772190 (-) True G100204
TU111400 lncRNA upstream 21550 90768156 ~ 90768876 (-) True G100227
TU111456 lncRNA upstream 120884 90867490 ~ 90867760 (-) True G100271
TU111464 lncRNA upstream 138210 90884816 ~ 90890245 (-) False G100278
XM_036990069.1 mRNA downstream 48458 90695281 ~ 90696935 (-) True LOC118966737
XM_036990066.1 mRNA downstream 50160 90693579 ~ 90695233 (-) True LOC118966736
LOC118966735 mRNA downstream 88374 90645978 ~ 90657019 (-) True LOC118966735
XM_036988559.1 mRNA downstream 142619 90548240 ~ 90602774 (-) False LOC110531748
XM_036990078.1 mRNA upstream 46 90746652 ~ 90748391 (-) True LOC118966739
XM_036990082.1 mRNA upstream 56718 90803324 ~ 90813931 (-) True LOC110513773
XM_036988624.1 mRNA upstream 173389 90919995 ~ 90969586 (-) False LOC118936689
XM_036988621.1 mRNA upstream 173389 90919995 ~ 90970589 (-) False LOC118936689
XM_036988617.1 mRNA upstream 173389 90919995 ~ 90970591 (-) True LOC118936689
TU111289 other downstream 7196 90686674 ~ 90738197 (-) False G100197
TU111345 other downstream 9298 90627968 ~ 90736095 (-) False G100197
TU111315 other downstream 60554 90627533 ~ 90684839 (-) False G100197
TU110433 other downstream 781188 89963873 ~ 89964205 (-) True G99602
TU110424 other downstream 787477 89957392 ~ 89957916 (-) True G99595
TU111325 other upstream 34414 90781020 ~ 90782397 (-) False G100197
TU111293 other upstream 56839 90803445 ~ 90856566 (-) False G100197
TU111298 other upstream 56839 90803445 ~ 90856566 (-) False G100197
TU111318 other upstream 108349 90854955 ~ 90856343 (-) True G100197
TU111641 other upstream 236129 90982735 ~ 90985169 (-) True LOC110516041

Expression Profile