RNA id: XM_036988624.1


Basic Information

Item Value
RNA id XM_036988624.1
length 4007
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC118936689
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90919995 ~ 90970591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAAACGAGCAGATGGTGCGCGAGGCAGCCGGATGTATTGTTGAAGGGAGGGCTCTGACTGGTGCGCGACAGCACTAACAAAGTAATAGTAACCTAGAACATATTGTTTCTATTATTTTTGTCGGTATATTCCTATATTCACACGATCTGACCAGTAGGATAGTGTAAGTTAGACTACAGAAATTGGCTCCGACGACGGATTTTATTAAAGCGAGGAAATAGGCTACCAAGCGGTGATAAATCCGTTTCTCGTATTCTTTGAAACGTCGGGAATCAAAGCTCTGCCTCCCAGTGAACCGCTACACCGGCCGGCATGTCTTACCAAGGCAAGAAGAACATTCCCCGTTTGTCGGTAGGCACTCCTCGTTCATCGACTGATCGCCTCATTATCAAAGGAGGAAAGATCGTTAATGATGACCAGTCTTTCTACGCAGACGTCTATGTGGAGGATGGCACCATCAAGCAGATCGGTGAGAACCTTTTAGTTCCAGGAGGGGTGAAGACGGTTGATGCCTACGGACACATCGTGATCCCCGGTGGCATCGATGTGAACACCAGCCTCCAGACCTCCCAGCTGGGAATGAGCCCTTCAGATGACTTCTACCACGGGACCAAGGCTGCCCTGGCAGGGGGCACCACCATGATCAttgaccaTGTGGTCCCTGAGCCTGGTGCCACTCTCCTGGGGGCCTACGACCAGTGGAAGGACATAGCAGACAGGGGGTCCTGCTGTGATTACTCCCTCCACATGGACATCACCCGCTGGCACGACGGACTCTTTGAAGAGATGGAGAGTCTGGTGAAGAATAAAGGAGTCAATTCCTTCTTGATCTTCATGGCTTACAAGGACAAATTCCAGAGCTCAGATAGTCAGATGTATGAGATGTTTGGTATCATTAGAGACCTGGGGGCCATCGCTCAGGTTCACGCTGAGAACGGGGACATCATTGACGagGAGCAGAAGCGACTACTGGAGCTGGGGATCACTGGGCCTGAGGGACATGTGCTGTGTCACCCAGAGGAGGTGGAGACAGAGGCAGTGTACCGGGCCATCACCATCGCCAAGCAGGCCAACTGTCCTCTCTACATCACCAAGGTGATGAGCAAGTCGGCTGCTGATGTCATCGCCAAGGCCAGAAAGAAGGGCATGGTGGTTTATGGCGAGCCAATCACAGCCAGCCTTGGGACAGACGGATCACACTATTGGAGTAAGAACTGGGCTAAGGCAGCAGCGTTCGTCATGTCCCCGCCCCTCAGCCCAGACCCCAGCACCCCCGACTACCTCAACTCCCTGCTTTCCTGTGGAGACCTTCAGGTGACGGCCAGTGGCCACAGTACCTTCTCGACGGCCCAGAAGGCTGTTGGGAAAGACAACTTCACCCTCATCCCTGAGGGAACTAACGGCATCGAGGAGAGGCTAGCCATCGTCTGGGAGAAGGCTGTGGCGACAGGCAAAATGGATGAGAATGAGTTTGTTGCGGTGACGAGCACCAACGCTGCCAAGCTGTTCAACCTGTATCCTCGTAAAGGAAGGATCGCTGTGGGGTCAGACGCAGACATCGTGATCTGGAACCCCAAGGAGACCAAGACCATCTCAGCCGCGACCCAcgcactgACAGTGGAGATTAACATCTTTGAGGGCATGGAGGTCCGGGGAGCCCCGGTTGTGGTGATCAGCCAGGGGAAGATCGTCCTGGAGGGGGGAAAGCTGAACGTCACAGAGGGCTCTGGACGCTTCGTACCCAGAAAGGCTTATCCTGACTTCATCTACAAGAGGATCAAAGCACGCAGCAAGatGGCTGATGCCCGTGGCGTCCCCCGAGGGAACTATGATGGACCGGTCCATGATGTCATCAGCATGACTAAGTCAGTGCCGGCCACTCCCTCCAGCAGGGGGCCCCAGTGCCCAGGGAAGGGCCCCCTCGGCCCCACCAGGAACCTGCACCAGTCTGGTTTCACCCTATCCGGTATGGGAACTCAGATTGACGACCACATCCCACGACGCTCAGCACAGAGGATCGTGGCGCCACCCGGTGGCCGCTCCAATATCACCTCCCTGTCGTGAACCTGGGAGCTCCTTGCTCCTCACGTCTGCTGTAGGGAGAAAAATAAATCAACTACTGTAGCAATTACCAACTACATCAATCAAAACAAATCTCACCCGGCTTCCAGAACTAAACTCAACAGTGAAACCTGAACATGCAATCCTCTTCTCAGATACAACTGTAAAACAGTATACAGATTAGAACTACATTTACCACTAGTAGTTACCAACAGTATACAGCATAGAACTACAATTACCACTAGTAGTTAccagtcattctatttctatggtagaCACACCAACTGGTAAAACCCACTAACTTAGTACTTTGATCTGTCATCCTTTATCAATATTGTGATCAATTCCTCAATCAATTTATCTCATCACCCATCAATAGTCAACTGTCCCTGTCAGATCTCCATAGCATGCAGTTTAAacagtctctgtctcctcagtcAGATAACCGTCTCTCTCATCGTCTCCTCAGCTTCACTATAGCTTTACTAACATGGTGATACATGAGTCCTAGATGAAAGTAGTTCTCTTTAGACCACAGAATgcctctcagctctctctctctctctctcgtcgtaGTGATGCCTGCTTCTGCTTTCGCTTCAATGCTTCTAAGAAACTCTGTAGTTGAGTccaacatggaactctattccctagatagtgcactagaggacaaaagtagtgcgctatctAGGGAATAGAGGGCCATTTCAGACTGACGCGaacttgttgtctctctctgttgttattTAGTCATGGCTGTAGGCTATTTAGGCTTCATCTTACCGTCTCTTACTGTTATATGCATGACTTTTCCTCTTCATCGTTACTCATTACAAATACAACAAGGAAAATAAGTGCGTGTTACTGTTACTGTGAACAGACTGTAGGGACAGTCCTCTAGTCACGCTTGTCTTACTATTATTATGATGTTTTATCCCAATGCAGGTGAGCTAACTTTGCTTCCATGGTATATTCAGTCAGTCAGAATAGGAACTTCGCCAATCCTTCTATTCAGTCAGTCAGAATAGGAACTTCGCCAATCCTTCTATTCAGTCAGTCAGAATAGGAACTTCACCAATCCTTCTATTCAGTCAGTCAGAATAAGAACTTCACCAATCCTTCTATTCAGTCAGTCAGAATAAGAACTTCACCAATCCTTCTATTCAGTCAGTCAGAGTAAGAACTTCACCAATCCTTCTATTCAGTCAGTCAGAATAAGAACTTCACCAATCCTTCTATTCAGTCAGTCAGAATAAGAACTTCTTCAATCCTTCATGTCTATATAGGAGGTACAGGGAAGCCCATATCATCTGtatatctgtgtttttgtcttTATAGCACAGCCATGTTCCACTGTCATCGTGTGACttttatattttttgtatataAAGACCAAACATCCTGGTGCTTTGAAACCCTAGCCTGGTTCAGCCATACTGAATGCTCCACTGACTTGGTGAAACAGAGCATAGCAGTCAGGATTCCAGGCTATCGAACACCCACGTTGTAACCAGGGATACACAGGGATACGTGGAGCTGTCAACAATAAAACAGTGGTTTTAAAAGTCTttcgctttaaaaaaaaaacctgaCTCTTATTTGTAATGATTTTATTTAATTTTCTACCatttcctttctctctttttgtAGACTTCACGTTTGTACTTTTACATGGTCCGGTTGAGAAAGTGAactttattttgtttgtttgttgcctAAATAGACATCAACAACATTACCGTTGTTCTTGTTCAACAGTGTTGTAACTCGGTCAGTCTTTGGAAAGGTTGTTTGCATTCGTTAAGTGGTCATGTAAAAAAGGGCAAATGAAGTGGTCCATTTTTAGTCTTTTTCTACTGTTTCTGTGTCCAATGGAAATAGGATTTGTGTCCCGAAAGCTAATGTAAGCATGTCCTGAATAAAGTTTGAGGGGGAAAAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111633 lncRNA downstream 141 90919564 ~ 90919854 (-) True G100384
TU111498 lncRNA downstream 1304 90918415 ~ 90918691 (-) True G100296
TU111490 lncRNA downstream 8108 90910951 ~ 90911887 (-) True G100291
TU111476 lncRNA downstream 10649 90908489 ~ 90909346 (-) True G100288
TU111470 lncRNA downstream 21942 90895687 ~ 90898053 (-) True G100282
TU111661 lncRNA upstream 23550 90993136 ~ 90993693 (-) False G100400
TU111662 lncRNA upstream 23550 90993136 ~ 90993693 (-) False G100400
TU111663 lncRNA upstream 23550 90993136 ~ 90993693 (-) False G100400
TU111665 lncRNA upstream 23550 90993136 ~ 90993693 (-) False G100400
TU111667 lncRNA upstream 23550 90993136 ~ 90993693 (-) False G100400
XM_036990082.1 mRNA downstream 106064 90803324 ~ 90813931 (-) True LOC110513773
XM_036990078.1 mRNA downstream 171604 90746652 ~ 90748391 (-) True LOC118966739
XM_036990074.1 mRNA downstream 173389 90745393 ~ 90746606 (-) True LOC118966738
XM_036990069.1 mRNA downstream 223060 90695281 ~ 90696935 (-) True LOC118966737
XM_036990066.1 mRNA downstream 224762 90693579 ~ 90695233 (-) True LOC118966736
XM_036988630.1 mRNA upstream 13681 90983267 ~ 91072716 (-) False LOC110516041
XM_036988631.1 mRNA upstream 13681 90983267 ~ 91072716 (-) False LOC110516041
XM_036988636.1 mRNA upstream 13681 90983267 ~ 91072716 (-) False LOC110516041
XM_036988637.1 mRNA upstream 13681 90983267 ~ 91072716 (-) False LOC110516041
XM_036988640.1 mRNA upstream 13681 90983267 ~ 91072716 (-) False LOC110516041
TU111268 other downstream 61023 90629672 ~ 90858972 (-) False G100197
TU111293 other downstream 63429 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 63429 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 63652 90854955 ~ 90856343 (-) True G100197
TU111283 other downstream 137598 90629672 ~ 90782397 (-) False G100197
TU111641 other upstream 13149 90982735 ~ 90985169 (-) True LOC110516041
TU111909 other upstream 263154 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 822993 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1621995 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1667712 92637298 ~ 92638881 (-) True G102083

Expression Profile