RNA id: TU111641


Basic Information

Item Value
RNA id TU111641
length 2378
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC110516041
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90982735 ~ 91072716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aCCTTTTTAAACCTGACTGCTGTCCCTcgttagtgatgatgatgatgatgacgtcTCGATGGAACACTCTATGGAAGAGTTCATCTCTATGGATGAAGACTTCAGTGGAATTGAAGAACTCTTAATAAAGGGGAGTGTTTTGTGTCTTCTTTTCCCTGCTGAGCAGGTGGTGCTCTGGTCGCTTCCCTTTGGAagcatgaagaagaagaagaagaagagtttgattgattgattgaaaaacAAACTGTAGTGAAGTCAGGCGGTACTCCTGCTCGGGGCTTGAACCTGGATCTTTTCTGTTCAACCCAACACTTTAGCCAAGAGATCCAAAACCTCTTGACGAGGTCACTAGGTGTTGGGTTATGTTAAACGACGGTGAACTGAGACATTTTTACCTCAGCTcttaacattcacacacactccaCTGAAGCTGGGCATTTCCTAAAATGGACACCATACCACTGTTTACACTATCTGACCACGCTGTTATTACACTCACAGGGAGCTAGTCACAGAAAGAGAGCCCATCCCCGAACTTTAAAATGGTGAAAGCCTTCAGCGATGCTGCCCATACTTAAAACTGGCTTTGTGGCCAGTGtgccctctatctatctctatggcctCAGCCCTTCCCCTGTCTAGTCCAGACATGCTGTGGGACTCATTAACTCCTCAAATCTCAGTGTTGGAAATGAAACCAGAAGCCAAACTGTTGGTATTATTAGACATCATGTATTTTTGAATGTATGAAAAAAGGCAAagattttaaaatacatttctcaAAAGAGGAATAAATAAAATGCTAAATTAgatattatttttttgttgatgAAGAATGAAGGACCTTTCAATGATTTTAGAAtttttcatttgatccgatttaTGTAAATCTGATCTTCCCCCTTGGTGCTTGGGAGAGAGTGGGTTTGTTTCAGATGGGGATCTTGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGCAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGTGTTTGTTTCAGATGGGGATCTTGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGTGTTTGTTTCAGATGGGGATCTTGGTTAGTTCTGTTATGTCCTGATGCAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAAGGTGTGTTTGTTTTAGATACGGGACCTTGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGTGTTTGTTTTAGATAGGGGACCTTGGTTAGTTCTGTTATGTCCTGATGGAGAAGGTGTGTTTGTTTTAGATACGGGACCTTGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGTGTTTGTTTTAGATAGGGGACCTTGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGGTGGAGAGGGTGGGTTAGTTCTGTTATGTCCTGATGGAGAGGGTGTGTTTGTTTTAGATAGGGGACCTTGGTTAGTTCTGTTATGTCCTGATGGAGACAAATACCTCCCATTGAGTCTTCATGACTCCATGTTAAAGCAGATTGTGTATGAAAGATGTATTTTATGCATTATGTTGCCATTAAATGGGATCAAGCCCCGTTTTTATGGACTACTGCACCTTCAtaaccaagcacacacacacacccacaggaacacaaagcacacacacacacacacatacacacacacagacacacacacccacaggaacacaatgcacgcacgcacacacacacacacacacacacacagacacacacacccacaggaacacaatgcacgcacacacacacacacacacacacacagacacacacacacacacacacaaagcacgcacgcacgcacacacacacacacacacacacacacacagaggaacacaacgcacgcacccacacgcactcacacacagaaGACTTGAAATGATTAACACAGGACGTCACCAGCCATATCTGAATACTAGGATAGATGACATCACTTCTGAAACCAAATAAGGAAAAGTCTCCACCCCAAACAGAGGCACAGGTAAGAATCATATTATATGAATGCTTTATGACACAtctaaaaatgtattattattatcaaaCAATGTTGAATATTGTTTTATCttttgatatatattttttatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU111651 lncRNA downstream 14582 90967654 ~ 90968153 (-) True G100396
TU111646 lncRNA downstream 43331 90938726 ~ 90939404 (-) True G100391
TU111633 lncRNA downstream 62881 90919564 ~ 90919854 (-) True G100384
TU111498 lncRNA downstream 64044 90918415 ~ 90918691 (-) True G100296
TU111490 lncRNA downstream 70848 90910951 ~ 90911887 (-) True G100291
TU111661 lncRNA upstream 7967 90993136 ~ 90993693 (-) False G100400
TU111662 lncRNA upstream 7967 90993136 ~ 90993693 (-) False G100400
TU111663 lncRNA upstream 7967 90993136 ~ 90993693 (-) False G100400
TU111665 lncRNA upstream 7967 90993136 ~ 90993693 (-) False G100400
TU111667 lncRNA upstream 7967 90993136 ~ 90993693 (-) False G100400
XM_036988617.1 mRNA downstream 12144 90919995 ~ 90970591 (-) True LOC118936689
XM_036988621.1 mRNA downstream 12146 90919995 ~ 90970589 (-) False LOC118936689
XM_036988624.1 mRNA downstream 13149 90919995 ~ 90969586 (-) False LOC118936689
XM_036990082.1 mRNA downstream 168804 90803324 ~ 90813931 (-) True LOC110513773
XM_036990078.1 mRNA downstream 234344 90746652 ~ 90748391 (-) True LOC118966739
XM_036988668.1 mRNA upstream 105242 91090411 ~ 91119121 (-) False LOC110531579
XM_036988670.1 mRNA upstream 106250 91091419 ~ 91119379 (-) False LOC110531579
XM_036988676.1 mRNA upstream 331999 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 331999 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 331999 91317168 ~ 91530446 (-) False LOC118966091
TU111268 other downstream 123763 90629672 ~ 90858972 (-) False G100197
TU111293 other downstream 126169 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 126169 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 126392 90854955 ~ 90856343 (-) True G100197
TU111283 other downstream 200338 90629672 ~ 90782397 (-) False G100197
TU111909 other upstream 247571 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 807410 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1606412 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1652129 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1753844 92739013 ~ 92739530 (-) True G102119

Expression Profile

TU111641 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU111641 Expression in each Bioproject

Bar chart with 14 bars.
TU111641 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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