RNA id: XM_036988668.1


Basic Information

Item Value
RNA id XM_036988668.1
length 2511
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110531579
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91090411 ~ 91119379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTTTGTAGACGGGGGGCCCCCGCATCAGCGCGGCCTAAAAGCATTGCAAGTTTCTTGGCTAACAGGCAACCGAGCAGCTCTGACAATGTGTGCCAAAATGTATACTCCATAGTTAACTAGTTGCTATGTTGAAGTACACATTTAAAGGTGTCGGAGGAGGGAACGATTTCCAATGGTGCTTCTCTCAGGTGAAGGGAGCCATAGACGAAGATGTGGCTGAAGccgACATAATCTCAACGGTTGAGTTTAACTATTCTGGAGAACTACTAGCGACGGGAGACAAAGGAGGTCGTGTCGTCATTTTCCAACGGGAACAAGAGAGTAAAAACCGTCCTCATTCCAGAGGCGAATACAACGTGTACAGCACTTTCCAGAGCCATGAACCCGAGTTTGACTATTTAAAAAGCTTAGAAATCGAGGAGAAAATCAACAAGATAAGATGGTTACCTCAACAAAACGCTGCACACTCTCTGCTCTCAACAAACGACAAAACCATCAAGCTGTGGAAAATCAGCCAACGGGACAAAAGAGCAGAAGGCTACAACTTGAAAGACGAGGATGGAAGACTGAGAGATCCTTTCAGAATCACGTCGTTACGGGTGCCTGTGCTGCTGCCCATGGACCGGATGGTGGAGGCTAGTCCGAGGAGGATATTCGCTAACGCACACACATATCACATCAATTCCATCTCTGTAAACAGCGATCACGAAACGTACCTTTCGGCTGATGATCTCAGGGTTAACCTCTGGCACTTAGAAATCACTGATAGAAGTTTTAACATTGTAGATATAAAGCCTGCCAATATGGAGGAGCTGACAGAAGTCATCACAGCTGCAGAGTGCCATCCACACCAGTGTAATGTATTTGTGTACAGTAGCAGTAAGGGGACCATCCGCCTCTGTGACATGCGAGCTGCTGCCCTCTGTGATAGGCAAAGCAAATTCTTCGAGGAGCCAGAGGACCCTAGCAGCCGGTCCTTCTTCTCCGAGATCATCTCCTCAATATCGGATGTGAAGTTTAGCCACAGCGGCCGTTACATGATGACCAGAGACTACCTGTCAGTCAAGGTGTGGGATCTGAACATGGAAAACCGGCCTGTGGAGACCTATCAGGTGCACGAGTACCTCCGTAGCAAGCTCTGCTCGCTGTATGAAAACGACTGCATCTTCGACAAGTTCGAGTGCTGCTGGAACGGTGCTGACAGTGCCATCATGACGGGCTCGTACAACAACTTCTTCCGGATGTTTGACCGGAACACGCGGCGGGACGTCACGCTGGAGGCCTCTAGAGAGAACAGTAAACCTCGGGCCATCCTGAAGGCTCGCAAGGTGTCCACCGGGGGGAAGAGGAAGAAGGACGAGATCAGCGTAGACAGTCTGGACTTCAACAAGAAGATCCTGCACACCGCGTGGCACCCAAAGGAGAACGTCATCGCTGTCGCCGCCACCAACAACCTCTACATATTTCAGGACAAGATCAACTAAActtaacaacccccccccccacccctccgaAACTGTTCCGACCCTCCCCGAACCCAGCCATCATACCTACCTACCGCGAATGGACAGAAATCTTGTACGTTGTATAGGTAAAGAATAGTTGTTAAATCTGTTTAAGGAAACAACAGCAGCCTTGTCTGTCCTCCTAATGAAGAAGAAATGTGATGCGCTTGTTTCGTTgtgtagccagccagccagacggCCGGACGCCTGCTGGAGTCAGACGGCCTGTTTCTTTAGAGTCTGAGGTGTTGGTTGGTTTGCGTCCTGTCTCGTTGCGAGGGCAGACACAGGCAGGCAGGAGCCCCAGGTCTGACTCTGGACAGACTAGCCCGGGCCTGACTGCGGCAGAAACATCGATGGGACAGCGGCTCAACAAAGAGGCCCAAAAAAATGTCAGTTTAAAGTTTAGTGTATTTATTTAAAAGTCTGAGCCTTGTTTTACTTCCTATGATTCGACGACACATTATGGAATAAGGAGGAAAGATGTGTTGGAAGTCAGAATGAGATATTAGTCTCTCAACTGTAAATCTGGGCCTTGGAAGAAACTGAAATTAAATTAGCTTAAATAAAGTAAGGTTGCAAATTCCCAGGTAACTTTCCCGAAAAATCccaaggttttccagaaatcccattTGGAAGATTCCCAGAATCGGAAAAAGGAATGAGCAGGAAATGATCGGGGAATCCTGCCAACTAGGATGCTGGGAAAGTTAGGGGAAATGTTGCAGCCTTACTGATAACATTCCTCCTCCCTGGCCGACTCTCTCAGGCCTCCTCCGTGTTGGACCTTGTTAAGCTCTTCAACACAGGTCTCCATGTTTGGTCAGTGGACAATTGTttttggttattttttttaaaaagtttttgtttattattattttttttagtttttatccttctttttttcttcttctcatgTATAATAACATTTTACTCATTGACTGTATCTATATAACCACACCGTCTGGTGTCAACCACTTAATAAAAGTAACGAAAACCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111731 lncRNA downstream 1322 91088710 ~ 91089089 (-) True G100442
TU111730 lncRNA downstream 2307 91087805 ~ 91088104 (-) True G100441
TU111688 lncRNA downstream 2649 91086856 ~ 91087762 (-) True G100416
TU111687 lncRNA downstream 3871 91085890 ~ 91086540 (-) True G100415
TU111719 lncRNA downstream 19003 91071168 ~ 91071408 (-) True G100435
TU111754 lncRNA upstream 2922 91122043 ~ 91122276 (-) True G100457
TU111759 lncRNA upstream 7749 91126870 ~ 91127294 (-) True G100462
TU111941 lncRNA upstream 167908 91287029 ~ 91287766 (-) True G100611
TU112155 lncRNA upstream 259911 91379032 ~ 91379936 (-) True G100777
TU112160 lncRNA upstream 281893 91401014 ~ 91401652 (-) False G100781
XM_036988630.1 mRNA downstream 17695 90983267 ~ 91072716 (-) False LOC110516041
XM_036988631.1 mRNA downstream 17695 90983267 ~ 91072716 (-) False LOC110516041
XM_036988636.1 mRNA downstream 17695 90983267 ~ 91072716 (-) False LOC110516041
XM_036988637.1 mRNA downstream 17695 90983267 ~ 91072716 (-) False LOC110516041
XM_036988640.1 mRNA downstream 17695 90983267 ~ 91072716 (-) False LOC110516041
XM_036988676.1 mRNA upstream 198047 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 198047 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 198047 91317168 ~ 91530446 (-) False LOC118966091
XM_036988692.1 mRNA upstream 198047 91317168 ~ 91530447 (-) False LOC118966091
XM_036988702.1 mRNA upstream 674497 91793618 ~ 91832379 (-) False LOC110531398
TU111641 other downstream 105242 90982735 ~ 90985169 (-) True LOC110516041
TU111268 other downstream 231439 90629672 ~ 90858972 (-) False G100197
TU111293 other downstream 233845 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 233845 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 234068 90854955 ~ 90856343 (-) True G100197
TU111909 other upstream 113619 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 673458 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1472460 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1518177 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1619892 92739013 ~ 92739530 (-) True G102119

Expression Profile