RNA id: XM_036988670.1


Basic Information

Item Value
RNA id XM_036988670.1
length 1601
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110531579
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91090411 ~ 91119379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCGCAATGACGTCACCGTGTCACGTCGACTGTCACTTGTGCGCCATTTTGGATTTTtggaaatgaaatgaaaaaaaatcacGGGCATTTCTGTAAAGCCCATATTCACGACTCTAATAACTGTTTCCTTTTTAATAACCTTGTACTGAAATTACAATCCTTACAACTCTAATCACTATCGGGaagaccccctcccccctcccaaaaAAAAGAAGCCAGTTGTGTTGCAGAAAGTGACAATGGCAGGTGTCGGAGGAGGGAACGATTTCCAATGGTGCTTCTCTCAGGTGAAGGGAGCCATAGACGAAGATGTGGCTGAAGccgACATAATCTCAACGGTTGAGTTTAACTATTCTGGAGAACTACTAGCGACGGGAGACAAAGGAGGTCGTGTCGTCATTTTCCAACGGGAACAAGAGAGTAAAAACCGTCCTCATTCCAGAGGCGAATACAACGTGTACAGCACTTTCCAGAGCCATGAACCCGAGTTTGACTATTTAAAAAGCTTAGAAATCGAGGAGAAAATCAACAAGATAAGATGGTTACCTCAACAAAACGCTGCACACTCTCTGCTCTCAACAAACGACAAAACCATCAAGCTGTGGAAAATCAGCCAACGGGACAAAAGAGCAGAAGGCTACAACTTGAAAGACGAGGATGGAAGACTGAGAGATCCTTTCAGAATCACGTCGTTACGGGTGCCTGTGCTGCTGCCCATGGACCGGATGGTGGAGGCTAGTCCGAGGAGGATATTCGCTAACGCACACACATATCACATCAATTCCATCTCTGTAAACAGCGATCACGAAACGTACCTTTCGGCTGATGATCTCAGGGTTAACCTCTGGCACTTAGAAATCACTGATAGAAGTTTTAACATTGTAGATATAAAGCCTGCCAATATGGAGGAGCTGACAGAAGTCATCACAGCTGCAGAGTGCCATCCACACCAGTGTAATGTATTTGTGTACAGTAGCAGTAAGGGGACCATCCGCCTCTGTGACATGCGAGCTGCTGCCCTCTGTGATAGGCAAAGCAAATTCTTCGAGGAGCCAGAGGACCCTAGCAGCCGGTCCTTCTTCTCCGAGATCATCTCCTCAATATCGGATGTGAAGTTTAGCCACAGCGGCCGTTACATGATGACCAGAGACTACCTGTCAGTCAAGGTGTGGGATCTGAACATGGAAAACCGGCCTGTGGAGACCTATCAGGTGCACGAGTACCTCCGTAGCAAGCTCTGCTCGCTGTATGAAAACGACTGCATCTTCGACAAGTTCGAGTGCTGCTGGAACGGTGCTGACAGTGCCATCATGACGGGCTCGTACAACAACTTCTTCCGGATGTTTGACCGGAACACGCGGCGGGACGTCACGCTGGAGGCCTCTAGAGAGAACAGTAAACCTCGGGCCATCCTGAAGGCTCGCAAGGTGTCCACCGGGGGGAAGAGGAAGAAGGACGAGATCAGCGTAGACAGTCTGGACTTCAACAAGAAGATCCTGCACACCGCGTGGCACCCAAAGGAGAACGTCATCGCTGTCGCCGCCACCAACAACCTCTACATATTTCAGGACAAGATCAACTAAActtaacaaccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111731 lncRNA downstream 2330 91088710 ~ 91089089 (-) True G100442
TU111730 lncRNA downstream 3315 91087805 ~ 91088104 (-) True G100441
TU111688 lncRNA downstream 3657 91086856 ~ 91087762 (-) True G100416
TU111687 lncRNA downstream 4879 91085890 ~ 91086540 (-) True G100415
TU111719 lncRNA downstream 20011 91071168 ~ 91071408 (-) True G100435
TU111754 lncRNA upstream 2664 91122043 ~ 91122276 (-) True G100457
TU111759 lncRNA upstream 7491 91126870 ~ 91127294 (-) True G100462
TU111941 lncRNA upstream 167650 91287029 ~ 91287766 (-) True G100611
TU112155 lncRNA upstream 259653 91379032 ~ 91379936 (-) True G100777
TU112160 lncRNA upstream 281635 91401014 ~ 91401652 (-) False G100781
XM_036988637.1 mRNA downstream 18703 90983267 ~ 91072716 (-) False LOC110516041
XM_036988676.1 mRNA upstream 197789 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 197789 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 197789 91317168 ~ 91530446 (-) False LOC118966091
XM_036988692.1 mRNA upstream 197789 91317168 ~ 91530447 (-) False LOC118966091
XM_036988702.1 mRNA upstream 674239 91793618 ~ 91832379 (-) False LOC110531398
TU111641 other downstream 106250 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 234853 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 234853 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 235076 90854955 ~ 90856343 (-) True G100197
TU111325 other downstream 309022 90781020 ~ 90782397 (-) False G100197
TU111909 other upstream 113361 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 673200 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1472202 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1517919 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1619634 92739013 ~ 92739530 (-) True G102119

Expression Profile