RNA id: TU111691


Basic Information

Item Value
RNA id TU111691
length 503
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110531579
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91090411 ~ 91119379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAAGTGTTACGCACTCAtgacctttttgttgttgttgtctctctctcagccgACATAATCTCAACGGTTGAGTTTAACTATTCTGGAGAACTACTAGCGACGGGAGACAAAGGAGGTCGTGTCGTCATTTTCCAACGGGAACAAGAGAGTAAAAACCGTCCTCATTCCAGAGGCGAATACAACGTGTACAGCACTTTCCAGAGCCATGAACCCGAGTTTGACTATTTAAAAAGCTTAGAAATCGAGGAGAAAATCAACAAGATAAGATGGTTACCTCAACAAAACGCTGCACACTCTCTGCTCTCAACAAACGACAAAACCATCAAGCTGTGGAAAATCAGCCAACGGGACAAAAGAGCAGAAGGCTACAACTTGAAAGACGAGGATGGAAGACTGAGAGATCCTTTCAGAATCACGTCGTTACGGGTATGTCTCCTCTCGTTCATCACCGTTTACCTGATATAGTTTTGAATGATCCCGTTCAGGGAAATATTATTgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111742 lncRNA downstream 2483 91102675 ~ 91102960 (-) True G100446
TU111741 lncRNA downstream 4255 91100594 ~ 91101188 (-) True G100445
TU111732 lncRNA downstream 11016 91093702 ~ 91094427 (-) True G100443
TU111731 lncRNA downstream 16354 91088710 ~ 91089089 (-) True G100442
TU111730 lncRNA downstream 17339 91087805 ~ 91088104 (-) True G100441
TU111744 lncRNA upstream 2275 91109309 ~ 91110819 (-) True G100448
TU111746 lncRNA upstream 5810 91112844 ~ 91113285 (-) True G100450
TU111754 lncRNA upstream 15009 91122043 ~ 91122276 (-) True G100457
TU111759 lncRNA upstream 19836 91126870 ~ 91127294 (-) True G100462
TU111941 lncRNA upstream 179995 91287029 ~ 91287766 (-) True G100611
XM_036988637.1 mRNA downstream 32727 90983267 ~ 91072716 (-) False LOC110516041
XM_036988676.1 mRNA upstream 210134 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 210134 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 210134 91317168 ~ 91530446 (-) False LOC118966091
XM_036988692.1 mRNA upstream 210134 91317168 ~ 91530447 (-) False LOC118966091
XM_036988702.1 mRNA upstream 686584 91793618 ~ 91832379 (-) False LOC110531398
TU111641 other downstream 120274 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 248877 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 248877 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 249100 90854955 ~ 90856343 (-) True G100197
TU111325 other downstream 323046 90781020 ~ 90782397 (-) False G100197
TU111909 other upstream 125706 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 685545 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1484547 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1530264 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1631979 92739013 ~ 92739530 (-) True G102119

Expression Profile