RNA id: XM_036988689.1


Basic Information

Item Value
RNA id XM_036988689.1
length 4247
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC118966091
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91317168 ~ 91530447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTGACTTGCCATACAGTATCCAAAACCCCTGGTGCCGAGAGAGGAGATGTGGGAAGGACACTATGCTACAGTAGCGCACTGGATTGCTGCTGTTCAGAGAGGAGCGGTCCAGACTCCACTGTGGTACCGGATGatgcagagacagatagagagcgagagaggtgcgCAGTAGCAGTTCTCATTGGAGACGTTTTGCAGTCGCTTAGGAATGTTTTCACGTTTTGCACTAAAGGAAGTTTTCTGAAACAGGAAAAACTGTGGCTAGTCCAACCTATCCCCTATGACTTGATTGGGGAGAAGTGAGTGGAGTTAAGCCGTGGCTCTGCGCGGTGCGGTGTTGCGTTAAGGGTGACGTTCGGTGTGGAAGAGGCTGAAACGGTATCAGGGTGAGAAGAGATTATCCGTGACAGCAAATAGAAGATCTCCATTGGGCtcgagctcctctctctcttttctgacaAACCATCACTCACCGACCAACCGTCACCGTTTGAAGATGCCCTGCGCTTCATGAACGAACGAGTGTCCTCAGTTCCTCCATTGTATGCTGGCTATACTGTAGCCTACCTGGCGACAAGGCTGCATGTTTTGGATATTTGGATAGGATAAACAGCGTAGTCATTTTTGGATTGAAATTACCAACGGAAAATTAATTCGTAAAtgatggacgagcgatgtcaatAGTGGACAACTGAAGGGATTGATAGCCTACAACGCATTATAGGGTCCCTCCCAGCCTTTCCAGGTGTTGTGTGGTGGTCTAGAATGTAGGGATGATCCCTGTGGGGCGACTGAAGGCTCAGCCACAGCTgtggcagatagagagagatgccTCTCCATGGCTGTGGATGCTCCCTGGCCCtggttctgctgctgctgcctcggGGCTCTGCCGGCTGGGTGCCAATACAGCCCCCGTTGCCGCGCCACACCATCACCACCCCTTCCTGCTCTCCCATCACCACCCTCCTCCGTTGCTCCAAGCCGTCTCCAGCTGGCAGCTGTCCTGTGATCCCTTCCTGCCTCTGGCCAGGATACCGACACACACAGCAGCTAACCCTGGCATCAGTCAGTTTCCCCTGCAGAACGTGCAGTGGGAGCTGCCATCTCCACACAACGTGCTGAGATTTCAGCCTTCGGCCAACTTGGAGCTGGTCCCTGTGTTTCCCCATCTGCACCGCTCAGTGCTGCCTCCTCACTGTGGCAAAGGATGGGTGGAGAAACAGGTCCCCGACTACAAGGCATACTTGAACAACACTCTAGCTCTGGAGAACACCTGGCTTACTCCGGAGGAAATAGGAATCTTCCAGCGGCACGAAAAACCATTGTTGATGACAAATCAAATGGCAATGAGCATATCTAGGCCAGCTACTGCCTCCAGGAGTCTCAACTCTCTCCTCATGTCACCCAGACCTGCTGCCTCCAGGAGTCTCAACTCTCTCCTCATGTCACCCAGACCTGCTGCCTCCAGGAGTCTCAACTCTCTGCTCATGTCACCCAGACGTATATCAGgttGTCCTGTGGCTATCAAGAGAGTGGGCAGGAGCAAGAGGATCTCTCTGGCAGCTGCCGCCATGACAGCCTTGGAATCAGACCCCTCCAGACTCCAAGGGCCTTCgccctcctcctgctctccctcgTTCATCCATCCCCTCCGCCTGTTCCAACTGTCACCTATCAAGATCCCCTTTCGCCTGTCTCCGCCTGGCCCAGGATCCAGTGCCACCTGGGAGGGCCTAATGGGACCCATGCTGCCAGCCCAGTTTGCCCGGATGACATCACTGTCAGCGCCAGGTGTTGCTCTCATGACCGGAGACTGGAGACCCCACTCAACATCAGATAAGCGGTTGTCCAGGAGAAGAGCGTCATGCGCTGCGACGTTGGTGCTGCATACACTGCAGGAAACAACCCCggagaaacacacagagCAGGAGATGGTAGAGGTCCCCATGGAGGAAGAGGACGTTGACCCTAAAGACAAGCGTCCTGTAGCGTCCACCCCTGTTCCCGGATCTCCATGGTGTGTGGTGTGGACGGGGGACGACAGAGTATTTTTCTTCAACCCAACGATACAGCTCTCTGTTTGGGATCAGCCGGTAGATCTGAAGGACCGTGGAGAGGATCTCAACAGGATTATAGAAGATCCTCCACATAAACGCAAAAAGGATTCTTTGTCCACAGAGGATGGTTCTAACTCTCCGTCTGCCGATGACGATGATGCTGATGATGAAGATGAACATTATTCAAAAACCAAGAGGAACAAACTGGAGGAACCTGCGGATGGTAATGAGGACCTGAGAGAGAGGGCAGGCTCAGAGACATGTGACTCTCCCCCTCATCGGACTGTTCTACCCTTAGGGCTCCGCATCACACACTTCAGGGACATGCTCCTTGAAAGAGGGGTTTCAGCGTTTTCCACATGGGAGAAAGAACTGCACAAGATCGTGTTTGATCCACGGTATCTTCTGCTAAACTctgcagaggagaggaaacagGTGTTTGAGCAGTTTGTCAAAGTGAGGATGAAGGAAGAACACAAGGAGAAACAGAGCAAACTGCTGCAAGCAAAAGACCAGTATAGAAAACTTCTAGAGGAGTCGAAAATCACATCCAGGTCAACTTTCAAAGACTTTTCTGTTAAGTACGGCCGTGACCAGCGCTTCAAGCAAGTGCTGAAGAAGAAAGACCAAGAGCACTTCTTCAACCAATTCATCAATGGGTTAaagaagagagataaagagaaccGCATGAGGCTGAGGAAGATGAGATGAGGAGGTATGAGGCTGAGGAAGATGAGATGAGGAGGTATGAGGCTGAGGAAGATGAGATGAGGAGGTATGAGGCTGAGGAAGATGAGTTGAGGAAGATGAGTTGAGGAGGTATGAGGCTgaggaggatgagaagaggaggtATGTGGCTGAGGAAGATGAGATGAGGAAGTATGAGGATGAGGAAGATGAGATGAGGAGGTATGTGGCTGAGGAAGATGAGATGAGGAAGTATGAGGCTGAGGAAGATGAGATGAGGAAGTATGAGGCTGAGGAAGATGAGATGAGGAGGTATGAGGCTGAGGAAGATGAGATGATGAGGTATGAGGCTGAGGAAGATGAGATGAGGAAGTATGAGGCTGAGGAAGATGAGTTGAGGAAGATGAGATGAGGAGGTATGAGGCTgaggaggatgagaagaggaggtATGTGGCTGAGGAAGATGAGATGAGGAAGTATGAGGCTGAGGAAGATGAGATGAGGAAGTATGAGGCTGAGGAAGATGAGATGAGGAGGTATGAGGCTGAGGAAGATGAGTTGAGGAGGTATGATGAGGCATCAGGATGTGAAATAGGCCTCTCAGAATACAGAATACCATGAATGGATAGATAGAGCTGTCTGATAAATGAGACGGCAGTTTCATGGGGAACACAAATGAACAGGTATCAGGATCCCTGTGGAATCAGTCTAAAAGGGGAGAAAGCAGCCGACAGTCATTTGCCTTGCAAACTCCAACTCTTCTCCAGATTTACAGTCAGCTGGGTCAGAGATGGCTTGGCTCCACATGCTAAGCAGGTAATCCAGATAACTCTCAGAAATGAAATACTGTTTCATATTGAAGCTACTGTATATATTGAAATTCAACATTTCTCATGTTTTGAGTCACAGTGACAAACATGAATTGAGCAtcatttctgtatttattttgtgTTTTCACATGACCTGTATGTAGATATCAATGTGTGTACACAATCACACAGTCCAATGCACAATTATAAAAGACATAATGTACATATACAGAAAACAATCCTGCAAAGCAATTGGTATTTTCTAACTATTTCAAACAAGGTTCTCCACAGCATCTGTGAGAATCAATGGATGGTAATTGTGTATTGATGGATTTTGtaaatgtccccccccccaaaaaaaaaatatgttatgtTTATTATGATGTGGGTTCTTCTTATGATGTAAAAGGATAAGTTATTGTTGCTTATTTGTCATTTAAACCGTGGTTAATGTGAAAGTCATACGTAGTGCATTCTCTGTAACAGTTCGAAGACGTTGTGCAAAGATTCTAAAGGACTGTTCATTTGGTTCTGAACATTGGGATTTTACAGATAATACAGTTTACTGTACAAAACAGTGTCTTTAAAATGTGtgttatatgttgtttttctcatttatttattttaatttaaacatGCAATGTTTGTGGGATTGTGAGTTTGATTAATTAAAACCTTCTAAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111941 lncRNA downstream 29402 91287029 ~ 91287766 (-) True G100611
TU111759 lncRNA downstream 189874 91126870 ~ 91127294 (-) True G100462
TU111754 lncRNA downstream 194892 91122043 ~ 91122276 (-) True G100457
TU111746 lncRNA downstream 203883 91112844 ~ 91113285 (-) True G100450
TU111744 lncRNA downstream 206349 91109309 ~ 91110819 (-) True G100448
TU112241 lncRNA upstream 31970 91562416 ~ 91562787 (-) True G100860
TU112270 lncRNA upstream 53022 91583468 ~ 91583738 (-) True G100884
TU112276 lncRNA upstream 63626 91594072 ~ 91594367 (-) True G100890
TU112285 lncRNA upstream 69439 91599885 ~ 91600129 (-) True G100899
TU112287 lncRNA upstream 80708 91611154 ~ 91611575 (-) True G100901
XM_036988670.1 mRNA downstream 197789 91091419 ~ 91119379 (-) False LOC110531579
XM_036988668.1 mRNA downstream 198047 91090411 ~ 91119121 (-) False LOC110531579
XM_036988643.1 mRNA downstream 244452 90983267 ~ 91072716 (-) False LOC110516041
XM_036988702.1 mRNA upstream 263172 91793618 ~ 91832379 (-) False LOC110531398
XM_036990088.1 mRNA upstream 1013443 92543889 ~ 92544887 (-) True LOC118966740
XM_036990094.1 mRNA upstream 1086610 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 1317018 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 1318594 92849040 ~ 92850414 (-) False LOC118966095
TU111909 other downstream 83380 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 331999 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 460602 90803445 ~ 90856566 (-) False G100197
TU112492 other upstream 262133 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1061135 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1106852 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1208567 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 1343123 92873569 ~ 92874498 (-) True G102158

Expression Profile