RNA id: XM_036988702.1


Basic Information

Item Value
RNA id XM_036988702.1
length 1322
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110531398
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91791792 ~ 91832379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAACACAATCACTCGGTGAGCGATTACACACGTCTGAGAGAACAGTAAGTGTTGTGTCTGCTGGAAATCCACATAGAACACAATCACTCGGTGAGCGATTACACACGTCTGAAAACATGGCGACTTTAGTGGAGGCAACATCCTCGCAGCAGTTTGAGGACTTGCTATCAAAGGCTGGCAAGTTCTTGACGGTGGTCCACTTCCAGGCAGCATGGGCCCCTCAGTGCAGTCAGATGAACGatgtgatgggagagctggcaaAGGAGAACAAACACACCATGTTTGTCAAGCTGGAGGCAGAAGCAGTGCCAGAGGTATCAGAGAAATATGAGATTACCTCAGTCCCTACCTTCCTCTTCTTTAAGGGTGGCCAGAAGATTGACAGGCTGGACGGAGCTCATGCCCCAGAGCTGACCAATAAGGTCCAGAGGCTGTCGGTCAGCTCGGGGGGGCTGGGCGGGCCAGGGGCGGAGCCCCCTAAAGAGGACCTTAATGAGCGTCTGAAGAGACTGATCAACGCAGCACCCTGCATGCTCTTCATGAAGGGCTCCCCCCAGGAACCCCGCTGcgGTTTCAGCCGTCAGATAGTGGCGCTTTTCAAGGACCATGCTATCCAGTTCAGCAGTTTTGACATCCTGTCAGACGAGGAAGTGAGAGGGGGGCTGAAGACCTTCTCCAACTGGCCCACCTACCCTCAGGTTTACGTTAACGGAGAACTCGTAGGGGGACTGGACATTGTCAAGGAACTAGCTGAATCTGGAGAGCTGGAGAATACCTGTCCCAAGGCCGTCACACTGGAgcacagGTTGAAGTCGACCATCAACAGGAGTCCAGTCATGCTGTTCATGAAGGGCAATaaagagCAAGCCAAATGTGGATTCAGTCTTCAGatactggagataatgaacagcTCAGGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcttcctctctctaccctcttcattcccctctctaccttcctcttcctctctctgccctgttcttcctctctctaacctcttcgccctctctctaacctcttcttcctctctctaccctcttcttcctctctctatcctcttcttcctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112533 lncRNA downstream 10341 91782582 ~ 91783277 (-) True G101056
TU112532 lncRNA downstream 12742 91780584 ~ 91780876 (-) True G101055
TU112530 lncRNA downstream 30588 91762727 ~ 91763030 (-) True G101053
TU112529 lncRNA downstream 31899 91761459 ~ 91761719 (-) True G101052
TU112527 lncRNA downstream 34394 91758801 ~ 91759224 (-) True G101050
TU112553 lncRNA upstream 6541 91838920 ~ 91839456 (-) True G101070
TU112557 lncRNA upstream 7623 91840002 ~ 91840580 (-) True G101072
TU112563 lncRNA upstream 15799 91848178 ~ 91848691 (-) True G101078
TU112567 lncRNA upstream 20115 91852494 ~ 91852965 (-) True G101081
TU112568 lncRNA upstream 21340 91853719 ~ 91854018 (-) True G101082
XM_036988692.1 mRNA downstream 263171 91317168 ~ 91530447 (-) False LOC118966091
XM_036988676.1 mRNA downstream 263172 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA downstream 263172 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA downstream 263172 91317168 ~ 91530446 (-) False LOC118966091
XM_036988670.1 mRNA downstream 674239 91091419 ~ 91119379 (-) False LOC110531579
XM_036990088.1 mRNA upstream 711510 92543889 ~ 92544887 (-) True LOC118966740
XM_036990094.1 mRNA upstream 784677 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 1015085 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 1016661 92849040 ~ 92850414 (-) False LOC118966095
XM_036988734.1 mRNA upstream 1016773 92849152 ~ 92850414 (-) False LOC118966095
TU111909 other downstream 559830 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 808449 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 937052 90803445 ~ 90856566 (-) False G100197
TU113894 other upstream 759202 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 804919 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 906634 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 1041190 92873569 ~ 92874498 (-) True G102158
TU113838 other upstream 1064102 92896481 ~ 93019288 (-) False LOC110528622

Expression Profile