RNA id: TU112492


Basic Information

Item Value
RNA id TU112492
length 700
RNA type TUCP
GC content 0.54
exon number 5
gene id LOC110531398
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91791792 ~ 91832379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTTAATAtcttccctgtgtttcctgtttgcAGGGTGGAATATAGCACCTTTGATATCCTGGAAGATGAGGAGGTTAGACAGGGTCTAAAGACGTACTCAAACTGGCCAACGTACCCTCAGCTATACGTCAATGGGGAACTCATTGGCGGGCTGGACATTGTGAAGGAGCTTAAAGACAGTGGAGACCTTTCTTCTGTCCTGAGGGGTGAATGCTAGGTTCCTGTAGTACTGTGATGGGAATGAGCTATGGACTACTGCactcttccttcccctctctaccctcttcttcctctctctaccctcttcttcctctctctaacctcttcgccctctctctaccctcctcttcccatctctaccctcctcttcccctctatcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctaccatcctcttcccctctctaccatcctcttcccctctctaccatcctcttcccctctctaccatcctcttcccctctctaccctcctcttcgccctctctctaccctcctcttcccctctctaccctcctcttcccctctctaccctcctcttcccctctctac

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112533 lncRNA downstream 9302 91782582 ~ 91783277 (-) True G101056
TU112532 lncRNA downstream 11703 91780584 ~ 91780876 (-) True G101055
TU112530 lncRNA downstream 29549 91762727 ~ 91763030 (-) True G101053
TU112529 lncRNA downstream 30860 91761459 ~ 91761719 (-) True G101052
TU112527 lncRNA downstream 33355 91758801 ~ 91759224 (-) True G101050
TU112536 lncRNA upstream 1567 91799012 ~ 91799260 (-) True G101059
TU112500 lncRNA upstream 4022 91801467 ~ 91802641 (-) True G101028
TU112499 lncRNA upstream 7850 91805295 ~ 91806535 (-) True G101027
TU112545 lncRNA upstream 25996 91823441 ~ 91823670 (-) True G101067
TU112553 lncRNA upstream 41475 91838920 ~ 91839456 (-) True G101070
XM_036988692.1 mRNA downstream 262132 91317168 ~ 91530447 (-) False LOC118966091
XM_036988676.1 mRNA downstream 262133 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA downstream 262133 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA downstream 262133 91317168 ~ 91530446 (-) False LOC118966091
XM_036988670.1 mRNA downstream 673200 91091419 ~ 91119379 (-) False LOC110531579
XM_036990088.1 mRNA upstream 746444 92543889 ~ 92544887 (-) True LOC118966740
XM_036990094.1 mRNA upstream 819611 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 1050019 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 1051595 92849040 ~ 92850414 (-) False LOC118966095
XM_036988734.1 mRNA upstream 1051707 92849152 ~ 92850414 (-) False LOC118966095
TU111909 other downstream 558791 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 807410 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 936013 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 936013 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 936236 90854955 ~ 90856343 (-) True G100197
TU113894 other upstream 794136 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 839853 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 941568 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 1076124 92873569 ~ 92874498 (-) True G102158
TU113838 other upstream 1099036 92896481 ~ 93019288 (-) False LOC110528622

Expression Profile