RNA id: XM_036989077.1



Basic Information


Item Value
RNA id XM_036989077.1
length 1599
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110531895
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94304371 ~ 94318374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caatattatcctcagtcattttccatcaaAAAATGTCAGACCCAGGTAGCTTGTCATGGTTGATAGATAACACTTTTTaaagaattcaaaattacaatgcatGTATTTTATAATTTGGTCAGTTATCCATGGATGTGTCGGTTCAGAATTTAGTTTTTGACATGCCTAAGTTTACTAATCTTGCCGATGTTGCAGGAATGTACCAATAAGTGCTGTGACGCGGCCACCTGTAAGTTGACCTGGGGATCGGCCTGCGCTCAGGGAGCCTGCTGCAAGGACTGCAAGATCAGCGTGTCAGGGACACCGTGCAGGGGATCTGTCAACTCATGCGACCTCCCAGAATACTGCAACGGCTCCACCTCCTACTGTCCATCTGACTTCTATATCATGGATGGGCTTCTCTGTGAGAACAACGCGGCGTACTGTTATGAGGGCCGCTGCCAGACCTACGACTACCAATGCAAACATCTTtttgaaacagGTGCAAGCAAAGCAGCAGACATCTGCTTTCAGACGGCTAATCTAAAGGGGGATGCGTTTGGGAACTGTGGCATGACGTCGTCAGGGACCTATGTGAAATGTAGTTTGGCTAATGCCATGTGTGGGAAGGTACAGTGCACTAACGTAAACACCAACAACCCTCCTCCTGGAGGCTCGGTCAGTAACCAGATCATCGATGGTTCTTCGTGTGTCAACGCAGACTTTAACCTGGGCTCTGATGTTCTGGACCCTGCCTATGTCAACCAGGGCAGCCCCTGCACCAAGGGGAAGGCCTGCCTTGACTTCCAGTGTGTGAATGCCTCAGCTCTACTGCCTGTTGACCTCCACTGTGATGCCAACAACACATGTAACAGCCGGGGGGTGTGTAACAACCAGGGCCACTGCCACTGTAATGACGGCTGGGGACCTCCTAACTGTGCCAAGTCAGGGAGAGGGGGCAGTGTGGACAGCGGGCCTGCACAGATAGATTATTCCCTGAGGGACGGCCTGCTGATCTTCTTCCTGCTGGTGGTTCCCATCCTGGTGCTGCTGGTGTTAGTACTGCTCTATGTGTTCAGAAGGGATACCCTGGAAAGATGCCTCAAAGGACCACGCTCCAGACGCTCTAGCCAATGCCTACATATCCACCATCCTCTACCTCAGGACCCAGGTATGGAGAAAACAACAATTGGAACCAACCTCCTGCCTCCCAGCCACCTCTCCCCCAGCAAGGCCCAGGTGTTCCCAAACCCATCCCTCCCAAGCATTAACCCTGACAGACACACCCCTTCGAACATAATGTGGGGCTCTTCCCTCATTCGTTATTGTAAATTTCATATTTGTATTTTACTCATATTTGTATGATTGTTTGTGGATatctaaaaaataataataatttaaaaaacattttattgcAGGAACATGATTTGGTGACAGGGACTTTTTAAGATATTGCTTTTTACATTATTACTACGGAAATGAAGGTAACGCATTTTGTAATAAAAATATACATATTGTTGATATTGTTCAGTTCCAGAAAGGCTCAATTTATTTTATGAGCGGTTTACAAGATCTTTTTTAATATTTAAATGTTACtcataataaaaaatgtatataata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU115059 lncRNA downstream 61966 94242051 ~ 94242405 (-) True G102838
TU115052 lncRNA downstream 68042 94236074 ~ 94236329 (-) True G102831
TU115057 lncRNA downstream 68910 94235222 ~ 94235461 (-) True G102836
TU115056 lncRNA downstream 73919 94230198 ~ 94230452 (-) True LOC110514051
TU115055 lncRNA downstream 74231 94229900 ~ 94230140 (-) False LOC110514051
TU115118 lncRNA upstream 11630 94330003 ~ 94330916 (-) True G102861
TU115077 lncRNA upstream 44006 94362379 ~ 94365421 (-) False LOC110531886
TU115078 lncRNA upstream 44006 94362379 ~ 94365421 (-) False LOC110531886
TU115079 lncRNA upstream 44006 94362379 ~ 94365421 (-) False LOC110531886
TU115080 lncRNA upstream 44006 94362379 ~ 94365421 (-) False LOC110531886
XM_036989094.1 mRNA downstream 9717 94283183 ~ 94294654 (-) True LOC110531859
XM_036989035.1 mRNA downstream 30635 94247401 ~ 94273736 (-) False LOC110531877
XM_036989044.1 mRNA downstream 30635 94247401 ~ 94273736 (-) False LOC110531877
XM_036989054.1 mRNA downstream 30635 94247401 ~ 94273736 (-) False LOC110531877
XR_005053382.1 mRNA downstream 30635 94247401 ~ 94273736 (-) True LOC110531877
XM_036989108.1 mRNA upstream 5029 94323402 ~ 94341808 (-) False LOC118966130
XM_036989115.1 mRNA upstream 5029 94323402 ~ 94341808 (-) False LOC118966130
XR_005053407.1 mRNA upstream 5029 94323402 ~ 94341808 (-) False LOC118966130
XR_005053409.1 mRNA upstream 5029 94323402 ~ 94341808 (-) True LOC118966130
XR_005053410.1 mRNA upstream 31905 94350278 ~ 94357842 (-) True LOC118966131
TU114769 other downstream 188683 94110119 ~ 94115688 (-) True G102679
TU114706 other downstream 281068 94023009 ~ 94023303 (-) True G102641
TU114228 other downstream 703751 93591824 ~ 93600620 (-) True LOC110513667
TU114209 other downstream 964727 93301985 ~ 93339644 (-) True G102290
TU114114 other downstream 1251522 93052277 ~ 93052849 (-) True G102217
TU115152 other upstream 104435 94422808 ~ 94423087 (-) True G102887
TU116016 other upstream 930719 95249092 ~ 95251658 (-) False G103509
TU116293 other upstream 1206019 95524392 ~ 95530959 (-) True G103698
TU116346 other upstream 1319748 95638121 ~ 95672096 (-) False LOC118966144
TU116355 other upstream 1319748 95638121 ~ 95672165 (-) False LOC118966144

Expression Profile


XM_036989077.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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XM_036989077.1 Expression in each Bioproject

Bar chart with 16 bars.
XM_036989077.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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