RNA id: TU34


Basic Information

Item Value
RNA id TU34
length 228
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G10
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24970 ~ 25197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttcaaactttttttaacaaatcaaaaactgaaaaattggccgtgcaaaattattcagcccccttaagttaatactttgtagcaccaccctttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37 lncRNA downstream 2104 27301 ~ 27691 (+) True G13
TU23 lncRNA downstream 10253 35450 ~ 39386 (+) True G6
TU42 lncRNA downstream 20897 46094 ~ 51278 (+) True G17
TU54 lncRNA downstream 30587 55784 ~ 78300 (+) True G25
TU102 lncRNA downstream 126668 151865 ~ 158760 (+) True G66
XM_036977095.1 mRNA downstream 359010 384207 ~ 421233 (+) True LOC110532027
XM_036977160.1 mRNA downstream 414768 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA downstream 414769 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA downstream 414770 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA downstream 414771 439968 ~ 497128 (+) True tbc1d23
TU47 other downstream 27514 52711 ~ 72299 (+) True G19
TU55 other downstream 31358 56555 ~ 93718 (+) True G26
TU80 other downstream 87762 112959 ~ 120307 (+) True G50
TU83 other downstream 95269 120466 ~ 130263 (+) True G51
TU206 other downstream 292850 318047 ~ 319974 (+) False G166

Expression Profile