RNA id: TU241


Basic Information

Item Value
RNA id TU241
length 3031
lncRNA type intronic
GC content 0.34
exon number 2
gene id G196
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 117036 ~ 120255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccagactctctgcttctccattctgccagactctctgcttctccattctgccagactctctgcttctccattctgccagactctctgctactccattctgccagactctctgccactccattctgccagactctctgccactccattctgcctgactctctgccactccattctgccagactctctgccactccattctgttgctccattctgcctgactctttgccactccattctgttactccattctgccagactctctgccactccattctgttactccattctgccagactctctgccactccattctgccagactctctgccattTGATTCTGCatgactctctgctactccattctgcctgactctctgccactccattctgttactccattctgccagactctctgccactccattctgccagactctctgccactccattctgccagactctctgccactccattctgcctgactctctgccactccattctgcctgactctctgccactccattctgcctgactctctgctactccattctgccagactctctgctactccattctgccagactctctgccactcctccattctgcctgactctctgccactccattctgcctgactctctgccactccattcggcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgttactccattctgcttgactctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgcctgactctctgccactccagtctgcctgactctctgccactccattctgttactccattcggcctgactctctgccactccatactgttactccattctgcctgactctctgccactccattctgcctgactctctgccactacattctgcctgactctctgccactacattctgttactccattctgcctgactctctgccactccattctgcctgactctctgccactacattctgcctgactctctgccactacattctgttactccattctgcctgactctctgccactccagtctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactctattctgttactccattctgcctgactctctgccactccattctgttaccccattctgcctgactctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgaccctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccagtctgcctgactctctgccactccattctgttactccattctgttactccattctgcctgactctctgccactccattcggcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgttactccattctgcttgactctctgccactccattctgttaccccattctgcctgactctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgcctgactctctgccactccagtctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattcggcctgacaCTCTGCCACTCCATtctgcctgactctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccagtctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattcggcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgttactccattctgcttgactctctgccactccattctgttaccccattctgcctgactctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgcctgactctgccactccagtctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattcggcctgacaCTCTGCCACTCCATACTGTTACTCCATTCTTACTGACTCTCTGCCacgccattctgcctgactctctgccactccattcggcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgcctgactctctgccactacattctgcctgactctctgccactacattctgttactccattctgcctgactctctgccactccagtctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactctattctgttactccattctgcctgactctctgccactccattctgttaccccattctgcctgactctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgaccctctgccactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccagtctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgttactccattctgcctgactctttgccactccattctgttactccattctgcctgactctctgccactccattctgttactccattctgcctgactctctgccactccattctgcctgactctctgccactccattctgccagactctctgcttctccattctgccagact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266 lncRNA downstream 235 98995 ~ 116801 (-) False G220
TU265 lncRNA downstream 235 113022 ~ 116801 (-) True G220
TU248 lncRNA downstream 90797 25846 ~ 26239 (-) True G203
TU245 lncRNA downstream 92728 23912 ~ 24308 (-) True G200
TU278 lncRNA upstream 52676 172931 ~ 173197 (-) True G231
TU310 lncRNA upstream 93462 213717 ~ 215231 (-) True G262
TU381 lncRNA upstream 177784 298039 ~ 298495 (-) True G319
TU353 lncRNA upstream 191160 311415 ~ 314707 (-) True G292
TU344 lncRNA upstream 197484 317739 ~ 321760 (-) True G290
XM_021583490.2 mRNA upstream 116856 237111 ~ 243619 (-) False sft2d2a
XM_021583381.2 mRNA upstream 140109 260364 ~ 306047 (-) True tmem45a
XM_036977352.1 mRNA upstream 382497 502752 ~ 504254 (-) True LOC118964585
XM_036977465.1 mRNA upstream 513031 633286 ~ 681917 (-) False plcxd1
XM_036977490.1 mRNA upstream 513031 633286 ~ 681917 (-) False plcxd1
TU247 other downstream 91363 25269 ~ 25673 (-) True G202
TU323 other upstream 116874 237129 ~ 243423 (-) True sft2d2a
TU1544 other upstream 529696 649951 ~ 681896 (-) True plcxd1
TU1695 other upstream 849930 970185 ~ 976099 (-) False G1355
TU1693 other upstream 850151 970406 ~ 974095 (-) False G1355
TU1694 other upstream 850151 970406 ~ 972696 (-) False G1355

Expression Profile