RNA id: TU83


Basic Information

Item Value
RNA id TU83
length 3487
RNA type TUCP
GC content 0.43
exon number 3
gene id G51
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 120466 ~ 130263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcagagagtctggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcatgCAGAATCgaatggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcaaagagtcaggcagaatggagtaacagaatggagtggcagagagtctggcagaatggagtggcagagagtcgggcagaatggagtggcagagagtctggcagaattgagtagcagagagtctggcagaatggagaagcagagagtctggcagaatggagaagcagagagtctggcagaatggagaagcagagagtctggcagaatggagaagcagagagtctggcagaatggagaagcaaagagtctggcagaatggagaagcagagagtctggcagaatggagaagcagagagtctggcagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcagcgagtcaggcagactggagtggcagagagtcaggcagaatggcgtaacagaatagagtggcagagagtcaggcagaatggagtaacagaatggagtggcaaagagtcaggcagaatggagtaacagaatggagtggcagagagtctgccagaatggagtggcagagagtcaggcagaatggagtggcagagagtctggcagaatggagtagcagagagtctggcagaatggagaagcagagagtctggcagaatggagaagcagagtctggcagaatggagaagcagagagtctggcagaatggagaagcaaagagtctggcagaatggagaagcagagagtctggcagaatggagaagcagagagtctggcagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcaaagagtcaggcagactggagtggcagagagtcaggcagaatggagtaacaaaatggagtggcagagagtcaggcagaatggagtaacaaaatggagtggcagagagtcaggcagaatggcgtaacagaatagagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagactggagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtggcagagggtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatgtagtggcagagagtcaggcagaatgtattggcagagagtcaggcagaatgtagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatgtagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtctggcagaatggagtggcagagagtctggcagaatggagtagcagagagtcagccagaatggagtaacagaatggagtggcagagagtcaggcagaaaggagtaacagaatggagtggcagatagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggagtggcagagagtcaggcagaatggattaacagaatggagtggcagagagtcaggcagaatggagtaacagaatggagtggcagagagtcaggcagaatggagtgaaAGTGCATTGTTCTGTAAGTcggtgcttcaacacctgcattgcttgctgtttggggttttaggctctgTACAGCACTGAGATATCACCTGATGTAAGAaggtctatataaatacatttgatttgagtaggTAACAAGGCTGTGGGCCAGGTGGATTGTTTTAGCAGCCTTTCCAATAAATTGGAATACAACAAAGAAGCCATCCACCCTTGGTgggctatcagcaggacaatagactttcACCTAGTTTATGGACTTTAAATGTATTAATGGGTGTTTGCGAGGCATGTCACTTCACCCATTGCTCCACATAGCCCACCACATGCACTGGTTTCTAACCACATCTGGatggatccataacaaattactattggaataaagtaggctaatgcaattgaagGCATCACATTGTTTAATTAAACACCCAAAGGCTGTAGAAAAGTTAGAAtgattattttgctcttcacttGCAGTCGCTTAGTAGCCTAGGCCTGCAGGCATGACCGggacgggatcggtgtccctccaTCGGAATGGTTGAGCGAAGGAGCTGTAACGGTTTTGAGGTTATTGTTTGTTAGGGGTGCCAGATAGGTCACTTCACCCATCTCTTCACATAGTCCACCACATGCACTGTGTGATGCCTTCAATTGCATTACCAGAGAAAATATTGATTCAGGGCCAAGCCAGGACTTTGTGGCACTTCCGCTCCTCAGCTGAGGGGTAACAGGCCTTAAGGCGTTAGACTTCTGGGTCTGGGAATCCGAGAAAAGTCTTATCACTCCAAAGATATCCAGGACGTTGCGGTGCTAAATCTCCTCCAATTCCTCAGCCGGGGGGTAACAGGCCCctgctagggggcagtattttgaggTTTGTATGacaagcgtgcccaaagtaaactgcctgttactcaggcccagaagctaggatttgAATagtaaacactctgaagtttctaaaaaactgttaaaataatgtctgagtataacagaactgatatggcaggcaaaaacctgaggaaaatccatccaggaaatgGGATTATTTTGATGCGAGTGATGCGTGATGCGAGTGGTTTTCTATTGAAAGCCTATTGACTATGTAATGGGTTAGGGCCCAGATtacagttcctatggcttccactagatgtcagtctttagacatggtttcaggcttgttttctaaAACAACGAAGAAAAATCCCTTTTGGTCAGGGGtctatggaatcatgcagtactggtttgcgaGCGTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54 lncRNA upstream 42166 55784 ~ 78300 (+) True G25
TU42 lncRNA upstream 69188 46094 ~ 51278 (+) True G17
TU23 lncRNA upstream 81080 35450 ~ 39386 (+) True G6
TU37 lncRNA upstream 92775 27301 ~ 27691 (+) True G13
TU34 lncRNA upstream 95269 24970 ~ 25197 (+) True G10
TU102 lncRNA downstream 21602 151865 ~ 158760 (+) True G66
TU108 lncRNA downstream 35356 165619 ~ 165880 (+) True G72
TU200 lncRNA downstream 177288 307551 ~ 307763 (+) True G160
TU207 lncRNA downstream 187784 318047 ~ 319974 (+) True G166
TU227 lncRNA downstream 232441 362704 ~ 363069 (+) True G183
XM_036977095.1 mRNA downstream 253944 384207 ~ 421233 (+) True LOC110532027
XM_036977160.1 mRNA downstream 309702 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA downstream 309703 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA downstream 309704 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA downstream 309705 439968 ~ 497128 (+) True tbc1d23
TU80 other upstream 159 112959 ~ 120307 (+) True G50
TU55 other upstream 26748 56555 ~ 93718 (+) True G26
TU47 other upstream 48167 52711 ~ 72299 (+) True G19
TU206 other downstream 187784 318047 ~ 319974 (+) False G166
TU707 other downstream 873520 1003783 ~ 1009153 (+) False G583
TU710 other downstream 873520 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1948635 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1948635 2078898 ~ 2079603 (+) False G961

Expression Profile