RNA id: TU206


Basic Information

Item Value
RNA id TU206
length 1102
RNA type TUCP
GC content 0.40
exon number 5
gene id G166
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 318047 ~ 319974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTATATACAACCTGTGAGAATGTCAAAAGTAAAATGACACAATGGCAAACTCGTAGTAATATTCTATAGTAAAGCACATTGAATTACACTACAACAGGACTGATACAACAGAACTGATACAACAGGACTGATACAACAGGACTGATACAACAGGACTGATACAACAGGACTGATACAACAGAGATGATACAACAGGACTGATACAACAGAGATGATACAACAGGACTGATACAACAGAACTGATACAACAGTACTGATAGTCCTGTTGTATCGGTCCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCATCTCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCAGTCCTGTTGTATCAGTTCTGTTGTATCATCTCTGTTGTATCAGTCCTGTTGTATCAGTCCTGTTGTATCAGTTATGTTGTACCAGTCCTGTTGTATCAGTCCTGTTGTATCAGTCTTGGTGTATCAGTTATGTTGTATCAGTCCTGTTGTATCAGTGCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCAGTGCTGTTGTATCAGTCCTGTTATATCATCTCTGTTGTATCATCTCTGTTGTATCAGTTCTGTTGTATCAGTCCTGGTGTATCATCTCTGTTGTATCAGTGCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCAGTGCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCAGTGCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCAGTCCTGTTGTATCATCTCTGTTGTATCATCTCTGTTGTATCAGTTCTGTATCTTCTTTTTAAACATTAGGGATCCATTGTAAGTCTAGTGAAGAGAGTTATGTTGAAAGGGACACATCAACcattttgaaaatatgaagtcTAAGACTGGGATCAGACCAGGCCTAGGTTATATAGACAGAGGGGATCTGAGTACACTCCTAATCTGAGACACTGTGTGAATACGGGCCCATACCTTTTGGAAAGTGAGTTCCTCTGGTTCACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200 lncRNA upstream 10284 307551 ~ 307763 (+) True G160
TU108 lncRNA upstream 152167 165619 ~ 165880 (+) True G72
TU102 lncRNA upstream 159287 151865 ~ 158760 (+) True G66
TU54 lncRNA upstream 239747 55784 ~ 78300 (+) True G25
TU42 lncRNA upstream 266769 46094 ~ 51278 (+) True G17
TU227 lncRNA downstream 42730 362704 ~ 363069 (+) True G183
TU228 lncRNA downstream 44769 364743 ~ 365179 (+) True G184
TU413 lncRNA downstream 55205 375179 ~ 375493 (+) False G345
TU414 lncRNA downstream 55205 375179 ~ 375493 (+) True G345
TU427 lncRNA downstream 69599 389573 ~ 391342 (+) False G355
XM_036977095.1 mRNA downstream 64233 384207 ~ 421233 (+) True LOC110532027
XM_036977160.1 mRNA downstream 119991 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA downstream 119992 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA downstream 119993 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA downstream 119994 439968 ~ 497128 (+) True tbc1d23
TU83 other upstream 187784 120466 ~ 130263 (+) True G51
TU80 other upstream 197740 112959 ~ 120307 (+) True G50
TU55 other upstream 224329 56555 ~ 93718 (+) True G26
TU47 other upstream 245748 52711 ~ 72299 (+) True G19
TU707 other downstream 683809 1003783 ~ 1009153 (+) False G583
TU710 other downstream 683809 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1758924 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1758924 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1758924 2078898 ~ 2079603 (+) True G961

Expression Profile