RNA id: TU228


Basic Information

Item Value
RNA id TU228
length 437
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G184
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 364743 ~ 365179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATcatccgaggaggaggaggacgaggaggagggggcaaCAGAGGACTGAGGTGAACCGGCTTGAGGCAGGAGACATGAAAGGTGGGGTGTACTCGAAGCGTTGCCGGCAATTTTAGTCGGACCACAGCAGGGTTAATGATTCTCTCCACcacgaacggaccaatgaactttggtgacagtttcctcgactcagtccgtagaggaagatcccgtgtagccaaccacaccttatctccgatggtataagcgggagcaggaatacggcgacgattcgcctggatctgataccggtcagaaactctaaggagaaccttcctggcccgatgccaggtccggtggcaacgacgaatgtgggcctggacagaagggaccgaaagatccctctcctgagaaggaaacaagggaggttggtatccgtacaggcattggaagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227 lncRNA upstream 1674 362704 ~ 363069 (+) True G183
TU207 lncRNA upstream 44769 318047 ~ 319974 (+) True G166
TU200 lncRNA upstream 56980 307551 ~ 307763 (+) True G160
TU108 lncRNA upstream 198863 165619 ~ 165880 (+) True G72
TU102 lncRNA upstream 205983 151865 ~ 158760 (+) True G66
TU413 lncRNA downstream 10000 375179 ~ 375493 (+) False G345
TU414 lncRNA downstream 10000 375179 ~ 375493 (+) True G345
TU427 lncRNA downstream 24394 389573 ~ 391342 (+) False G355
TU432 lncRNA downstream 25160 390339 ~ 390738 (+) True G355
TU434 lncRNA downstream 28246 393425 ~ 395232 (+) True G357
XM_036977095.1 mRNA downstream 19028 384207 ~ 421233 (+) True LOC110532027
XM_036977160.1 mRNA downstream 74786 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA downstream 74787 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA downstream 74788 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA downstream 74789 439968 ~ 497128 (+) True tbc1d23
TU206 other upstream 44769 318047 ~ 319974 (+) False G166
TU83 other upstream 234480 120466 ~ 130263 (+) True G51
TU80 other upstream 244436 112959 ~ 120307 (+) True G50
TU55 other upstream 271025 56555 ~ 93718 (+) True G26
TU47 other upstream 292444 52711 ~ 72299 (+) True G19
TU707 other downstream 638604 1003783 ~ 1009153 (+) False G583
TU710 other downstream 638604 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1713719 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1713719 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1713719 2078898 ~ 2079603 (+) True G961

Expression Profile