RNA id: TU414


Basic Information

Item Value
RNA id TU414
length 277
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G345
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 375179 ~ 375493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcttatttacaggctctaaccaatagtgcaaaaaaaggtattaggtgaacaatatgtAGGTAAAGaagtaaaacaacagtaaaaagacaggctatatacagtagcgaggctataacagtagcgaggctatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228 lncRNA upstream 10000 364743 ~ 365179 (+) True G184
TU227 lncRNA upstream 12110 362704 ~ 363069 (+) True G183
TU207 lncRNA upstream 55205 318047 ~ 319974 (+) True G166
TU200 lncRNA upstream 67416 307551 ~ 307763 (+) True G160
TU108 lncRNA upstream 209299 165619 ~ 165880 (+) True G72
TU427 lncRNA downstream 14080 389573 ~ 391342 (+) False G355
TU432 lncRNA downstream 14846 390339 ~ 390738 (+) True G355
TU434 lncRNA downstream 17932 393425 ~ 395232 (+) True G357
TU446 lncRNA downstream 47723 423216 ~ 423512 (+) True G369
TU447 lncRNA downstream 48042 423535 ~ 423768 (+) True G370
XM_036977095.1 mRNA downstream 8714 384207 ~ 421233 (+) True LOC110532027
XM_036977160.1 mRNA downstream 64472 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA downstream 64473 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA downstream 64474 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA downstream 64475 439968 ~ 497128 (+) True tbc1d23
TU206 other upstream 55205 318047 ~ 319974 (+) False G166
TU83 other upstream 244916 120466 ~ 130263 (+) True G51
TU80 other upstream 254872 112959 ~ 120307 (+) True G50
TU55 other upstream 281461 56555 ~ 93718 (+) True G26
TU47 other upstream 302880 52711 ~ 72299 (+) True G19
TU707 other downstream 628290 1003783 ~ 1009153 (+) False G583
TU710 other downstream 628290 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1703405 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1703405 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1703405 2078898 ~ 2079603 (+) True G961