RNA id: TU480


Basic Information

Item Value
RNA id TU480
length 321
lncRNA type intronic
GC content 0.43
exon number 2
gene id G399
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 474223 ~ 474581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggggagaggattgAACTGCCCCACAATCCAAAGTACTAAGGTTGATATAGTATACTATTAAAGTATTCAcacatcaaattttatttgtcacatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaatagATGtcgtagacctcacagtgaaatgcttaatacaacaggtgtggtagaccttacagtgaaatgctgaatacaatagatgtagtagaccttacagtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470 lncRNA upstream 7695 464887 ~ 466528 (+) True G391
TU475 lncRNA upstream 10205 463502 ~ 464018 (+) True G396
TU453 lncRNA upstream 38428 435513 ~ 435795 (+) True G376
TU450 lncRNA upstream 41588 431661 ~ 432635 (+) True G373
TU447 lncRNA upstream 50455 423535 ~ 423768 (+) True G370
TU501 lncRNA downstream 82806 557387 ~ 557594 (+) True G420
TU529 lncRNA downstream 138073 612654 ~ 615491 (+) False G447
TU531 lncRNA downstream 138073 612654 ~ 616251 (+) False G447
TU530 lncRNA downstream 140991 615572 ~ 616251 (+) True G447
TU541 lncRNA downstream 157385 631966 ~ 633986 (+) True G456
XM_036977095.1 mRNA upstream 52990 384207 ~ 421233 (+) True LOC110532027
XM_021602630.2 mRNA downstream 127522 602103 ~ 617595 (+) True nit2
XM_036977980.1 mRNA downstream 307259 781840 ~ 972109 (+) False slc9a7
XM_036978058.1 mRNA downstream 614815 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 699130 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 699130 1173711 ~ 1299204 (+) False cyfip1
TU206 other upstream 154249 318047 ~ 319974 (+) False G166
TU83 other upstream 343960 120466 ~ 130263 (+) True G51
TU80 other upstream 353916 112959 ~ 120307 (+) True G50
TU55 other upstream 380505 56555 ~ 93718 (+) True G26
TU47 other upstream 401924 52711 ~ 72299 (+) True G19
TU707 other downstream 529202 1003783 ~ 1009153 (+) False G583
TU710 other downstream 529202 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1604317 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1604317 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1604317 2078898 ~ 2079603 (+) True G961

Expression Profile