RNA id: TU530


Basic Information

Item Value
RNA id TU530
length 643
lncRNA type intronic
GC content 0.58
exon number 2
gene id G447
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 612654 ~ 616251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtctgtctcctaacccctagctacatgtacatacagtgtctaccagtgtctgtctcctaacccctggctacatgtacatacagtgtctgtctcctaacccctggctacatgtacatacagtgtctgtctcctaacccctggctacatgtacatacagtgtctaccagtgtctgtctcctaacccctagctacatgtacatacagtgtctgtctcctaacccctggctacatgtacatacagtgtctaccagtgtctgtctcctaacccctagctacatgtacatacagtgtctgtctcctaacccctagctacatgtacatacagtgtctgtctcctaacccctagctacatgtacatacagtgtctgtctcctaacccctagctacatgtacctacagtgtctgtctcctaacccctagctacatgtacCTacagtgtctgtctcctaacccttagctacatgtacatacagtgtctgtctcctaacccctagctacatgtacatacagtgtctgtctcctaacccctagctacatgtacatacagtgtctgtctcctaacccctagctacatgtacatacagtgtctaccagtgtctgtctcctaacccctagctacatgtacatacagtgtctgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU529 lncRNA upstream 81 612654 ~ 615491 (+) False G447
TU501 lncRNA upstream 57978 557387 ~ 557594 (+) True G420
TU480 lncRNA upstream 140991 474223 ~ 474581 (+) True G399
TU470 lncRNA upstream 149044 464887 ~ 466528 (+) True G391
TU475 lncRNA upstream 151554 463502 ~ 464018 (+) True G396
TU541 lncRNA downstream 15715 631966 ~ 633986 (+) True G456
TU549 lncRNA downstream 33487 649738 ~ 655342 (+) True G464
TU553 lncRNA downstream 34828 651079 ~ 653450 (+) True G465
TU468 lncRNA downstream 45285 661536 ~ 662909 (+) True G389
TU555 lncRNA downstream 49924 666175 ~ 671266 (+) True G467
XM_036977160.1 mRNA upstream 118444 439965 ~ 497128 (+) False tbc1d23
XM_036977245.1 mRNA upstream 118444 439966 ~ 497128 (+) False tbc1d23
XM_036977209.1 mRNA upstream 118444 439967 ~ 497128 (+) False tbc1d23
XM_036977292.1 mRNA upstream 118444 439968 ~ 497128 (+) True tbc1d23
XM_036977095.1 mRNA upstream 194339 384207 ~ 421233 (+) True LOC110532027
XM_036977980.1 mRNA downstream 165589 781840 ~ 972109 (+) False slc9a7
XM_036978058.1 mRNA downstream 473145 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 557460 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 557460 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 557460 1173711 ~ 1299441 (+) False cyfip1
TU206 other upstream 295598 318047 ~ 319974 (+) False G166
TU83 other upstream 485309 120466 ~ 130263 (+) True G51
TU80 other upstream 495265 112959 ~ 120307 (+) True G50
TU55 other upstream 521854 56555 ~ 93718 (+) True G26
TU47 other upstream 543273 52711 ~ 72299 (+) True G19
TU707 other downstream 387532 1003783 ~ 1009153 (+) False G583
TU710 other downstream 387532 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1462647 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1462647 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1462647 2078898 ~ 2079603 (+) True G961

Expression Profile