RNA id: TU549


Basic Information

Item Value
RNA id TU549
length 1707
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G464
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 649738 ~ 655342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACTCAATTCCTGGAGGGCTGTGTCTCTGCTGGTTTTTGTTATTTCGTTTCAATTTGTGTCCAATTAAGACCTAGCCAACCAGATGAGGGGAGTATCTAACTAATCAATTATCTTAATTGATCAATAAAGTGCACGCGAGGACTAAAAACCTGCACACATTGTGCTCCAGAAAtgtagtttgacacccctgatcagTTGTTAAAAATCCTACCTGTGTAACTGCCCATTTATAAACAAACGGTCGTATCAGGGGCTTCATGTATTTGTCTAGCTTCTGCAGCAAATCAGGTTGGGTCAGGTCGACAGGGGAGCGGTCACTCCTATCCAGACAGTAGGTTATGGCATTATGGCTTCCTAAACAGAGAATCAAGGTACAGACAGATAGGGCCTGATATTACAAGTGTATGGTCACTGTCATGTGTCAGCCTAGTACCCATATGATGCCCCTAAGTGCATGGTCACTGTCATGTGTCAGTCTAGTACCCATGTGATGCCCCTAAGTGTATGGTCACTGTCATGTGTCAACCTAGTACCCATATGATGCTCCTAAGTGTATGGTCAATGTCATGTGTCAGCCTAGTACCCATATGATGCTCCTAAGGATGCAGTTCCTAAGGATCCAGATTACAACATACAGTAGGCGGCGGCCTATTATTCATTAAATCCCTTACTTCCCTACAAGGGAAATGGAAAGTGTTGGTGATGATATAATGCCATCTGATCAGTGTTGATGATATAATGCCATCTGATCAGTGTTGATGATGTAATGCCATCTGATTAGTGTTGAtgacataatgccatctgatcagtgttgatgacgtaatgccatctgatcagtgttgatgacataatgccatctgatcAGTGTTGATGATGTAATGCCATCTGATCAGTGTTGATGATATAATGCCATCTGATCAGTGTTGATGATGTAATGCCATCTGATCAGTGTTGATGATGTAATGCCATCTGATTAAAGTGTTGGTGTTGtgacataatgccatctgatcagtgttgatgacataatgccatctgatcagtgttgatgacataatgccatctgatTAAAGTGTTGGTGTTGTGACATAATGCCTTCTGATTAAAGTGTTGGTGTTGtgacataatgccatctgatTAAAGTGTTGGTGTTGTGACATAATGTCATCTGATTAAAGTGGTGGTGTTGTGACATAATGTCATCTGATTAAAGTGGTGGTGTTGTGACATAATGTCATCTGATTAAAGTGGTGGTGTTGTGACATAATGTCATCTGATTAAAGTGGTGGTGTTGTGACACAATGTCATCTGATTAAAGTGGTGGTGTTGTGACATAATGTCATCTGATTAAAGTGGTGGTGTTGTGACATAATGTCATCTGATTAAAGTGTTGATTATGTAATGCCATATGATTAAAGTGGTGGTGTTGtgacataatgccatctgattaaagtgatgatgacataatgccatctgatTAAAGTGTTGATTATGTAATGCCATCTGATTAAAGTGTTGAtgacataatgccatctgatTAAAGTGTTGATTATGTAATGCCATCTGATCAGTGTTGATGATGTAATGCCATCTGATCAGTGTTGATGATATAATGCCATCAGATTAAAGTGCTGGTGTTGtgacataatgccatctgatTAAAGTGCTGGTGTTGtgacataatgccatctgatTAAAGTGTTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU541 lncRNA upstream 15752 631966 ~ 633986 (+) True G456
TU531 lncRNA upstream 33487 612654 ~ 616251 (+) False G447
TU530 lncRNA upstream 33487 615572 ~ 616251 (+) True G447
TU529 lncRNA upstream 34247 612654 ~ 615491 (+) False G447
TU501 lncRNA upstream 92144 557387 ~ 557594 (+) True G420
TU468 lncRNA downstream 6194 661536 ~ 662909 (+) True G389
TU555 lncRNA downstream 10833 666175 ~ 671266 (+) True G467
TU564 lncRNA downstream 43089 698431 ~ 698631 (+) True G476
TU565 lncRNA downstream 43606 698948 ~ 784116 (+) True G477
TU578 lncRNA downstream 72231 727573 ~ 727883 (+) True G485
XM_021602630.2 mRNA upstream 32143 602103 ~ 617595 (+) True nit2
XM_036977160.1 mRNA upstream 152610 439965 ~ 497128 (+) False tbc1d23
XM_036977980.1 mRNA downstream 126498 781840 ~ 972109 (+) False slc9a7
XM_036978058.1 mRNA downstream 434054 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 518369 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 518369 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 518369 1173711 ~ 1299441 (+) False cyfip1
TU206 other upstream 329764 318047 ~ 319974 (+) False G166
TU83 other upstream 519475 120466 ~ 130263 (+) True G51
TU80 other upstream 529431 112959 ~ 120307 (+) True G50
TU55 other upstream 556020 56555 ~ 93718 (+) True G26
TU47 other upstream 577439 52711 ~ 72299 (+) True G19
TU707 other downstream 348441 1003783 ~ 1009153 (+) False G583
TU710 other downstream 348441 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1423556 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1423556 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1423556 2078898 ~ 2079603 (+) True G961

Expression Profile