RNA id: TU468


Basic Information

Item Value
RNA id TU468
length 1308
lncRNA type intronic
GC content 0.52
exon number 2
gene id G389
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 661536 ~ 662909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatattgatgtgtatagagtatattgatgtgtatagagtatattgatgtgtatagtttAATTcatgtatattgatgtatatagTGCACATTGATGTATATAAATGTGAATAGTGTATATTGACGTGTAtaatgtatattgatgtgtatagagtatATTGATGTATATAAATGTGAATAGTGTATATTGACGTGTAtaatgtatattgatgtgtatagtgtatattgatgtttatagtgaactgtgtattgatgtgtatattgctAAAATAGTGTATATTGGTGTATttagctcagtgtgtcaaatcgaagggcctgttgtccggacctctggcagcctCTTTGGGGGTgcctcagggttcaattctcgggattACTCTTTTccctgtatatatcaatgatgttgctcttgctgctggtgattctctgatccacctctacgcagacgacaccattctgtttacatctagcccttctttggacactgtgttaactaacctccagacgagcttcaatgccatacaacactccttccgtggcctccaactgctctttatTGCAaggaaaactaaatgcatgatattcaaccgatcgctgccagcacctgcccgcccgtccagcatcactactctggacggttctgacttagaatatgtggacaactacaaatacctaggtgtctggttagactgtaaactctccttccaaactcacattaagcatctacaatccaaaatgaaatctagaatctgcttcctatttcacaacaaagcctccttcaacataccctcgtaaaactgaccatcctaccggtcctcgacttcagcgaagtcatttacaaaatagcctccaacactctactcagcaaactggatcacagtgccatctgttttgtcaccaaagccccattatactacccaccactgcgacctgtacgctctcgttggctggccctcgcttcattctcgtcgccaaacccactggctccaggtcatccacaagtctctgctaggtaaagccccaccttatctcagctcactggtcaccatagcagtaaCCACCTGTAGcgctcgctccagcaggtatatctcactggtctcccccaaagccaattcttcctttggccgtctctccttccagttctctgctgccacgaACTGcaaaatgactggaacgaactgcaaaaatctctgaagctggagactcttacctccctcactaactttaagcatcagctgtcagagcagctcacagatcactgcacctgtacatagctcatctgtaaatagcccatccaatctacctcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU549 lncRNA upstream 6194 649738 ~ 655342 (+) True G464
TU553 lncRNA upstream 8086 651079 ~ 653450 (+) True G465
TU541 lncRNA upstream 27550 631966 ~ 633986 (+) True G456
TU531 lncRNA upstream 45285 612654 ~ 616251 (+) False G447
TU530 lncRNA upstream 45285 615572 ~ 616251 (+) True G447
TU555 lncRNA downstream 3266 666175 ~ 671266 (+) True G467
TU564 lncRNA downstream 35522 698431 ~ 698631 (+) True G476
TU565 lncRNA downstream 36039 698948 ~ 784116 (+) True G477
TU578 lncRNA downstream 64664 727573 ~ 727883 (+) True G485
TU579 lncRNA downstream 65412 728321 ~ 729099 (+) True G486
XM_021602630.2 mRNA upstream 43941 602103 ~ 617595 (+) True nit2
XM_036977160.1 mRNA upstream 164408 439965 ~ 497128 (+) False tbc1d23
XM_036977980.1 mRNA downstream 118931 781840 ~ 972109 (+) False slc9a7
XM_036978058.1 mRNA downstream 426487 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 510802 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 510802 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 510802 1173711 ~ 1299441 (+) False cyfip1
TU206 other upstream 341562 318047 ~ 319974 (+) False G166
TU83 other upstream 531273 120466 ~ 130263 (+) True G51
TU80 other upstream 541229 112959 ~ 120307 (+) True G50
TU55 other upstream 567818 56555 ~ 93718 (+) True G26
TU47 other upstream 589237 52711 ~ 72299 (+) True G19
TU707 other downstream 340874 1003783 ~ 1009153 (+) False G583
TU710 other downstream 340874 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1415989 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1415989 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1415989 2078898 ~ 2079603 (+) True G961

Expression Profile