RNA id: TU625


Basic Information

Item Value
RNA id TU625
length 2207
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G514
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 777327 ~ 779986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaacAATGTTTactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttgttctagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaacaatgttttactagtcatctagtcatcaaccatgttttgctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttgctagtcatctagtcatcaaccatgctttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgtttgGCTAGTCATCcagtcatcaaccatgttttactagtcatcaaccatgttgttctagtcatctagtcatcaaccatgtttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttgttagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgatttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttactagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttgctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttgctagtcatctagtcatcaaccatgttttactagtcatctagtcatcaaccatgttttaccAGTCATCTATTCATCAGCCATGTTTTGCTAGTCATCTAGTCATTACCATGTTTtgctagtcatctagtcatcaaccTTGCGCAGTACCACGGAGTAGAGATGGTGGGTGCAGCTTTGATTTTTGGACCAATGGCAGAAGAGGAAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608 lncRNA upstream 20901 749064 ~ 756426 (+) True G500
TU579 lncRNA upstream 48228 728321 ~ 729099 (+) True G486
TU578 lncRNA upstream 49444 727573 ~ 727883 (+) True G485
TU564 lncRNA upstream 78696 698431 ~ 698631 (+) True G476
TU555 lncRNA upstream 106061 666175 ~ 671266 (+) True G467
TU646 lncRNA downstream 57995 837981 ~ 839050 (+) True G535
TU653 lncRNA downstream 78399 858385 ~ 858631 (+) True G541
TU654 lncRNA downstream 79774 859760 ~ 860156 (+) True G542
TU656 lncRNA downstream 97245 877231 ~ 884260 (+) True G544
TU670 lncRNA downstream 104502 884488 ~ 887639 (+) True G546
XM_021602630.2 mRNA upstream 159732 602103 ~ 617595 (+) True nit2
XM_036977160.1 mRNA upstream 280199 439965 ~ 497128 (+) False tbc1d23
XM_036977980.1 mRNA downstream 1854 781840 ~ 972109 (+) False slc9a7
XM_036978058.1 mRNA downstream 309410 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 393725 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 393725 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 393725 1173711 ~ 1299441 (+) False cyfip1
TU206 other upstream 457353 318047 ~ 319974 (+) False G166
TU83 other upstream 647064 120466 ~ 130263 (+) True G51
TU80 other upstream 657020 112959 ~ 120307 (+) True G50
TU55 other upstream 683609 56555 ~ 93718 (+) True G26
TU47 other upstream 705028 52711 ~ 72299 (+) True G19
TU707 other downstream 223797 1003783 ~ 1009153 (+) False G583
TU710 other downstream 223797 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1298912 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1298912 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1298912 2078898 ~ 2079603 (+) True G961

Expression Profile