RNA id: TU1635


Basic Information

Item Value
RNA id TU1635
length 367
lncRNA type intronic
GC content 0.34
exon number 1
gene id G1314
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 844370 ~ 844736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGATGGGATGAAAAACATCTCCATTTATCCAAACTCCATGGTCTCCAGTACATCCAGGACCAAGTAGTTGCATCATTTCACAAAAGACTCCTCATCACACAGCTGACTATTGCAGTCTCCTCTCATCACACAGCTGACTATTGCAGTCTCCTCTCATCACACAGATGACTATATCAGTCTCCTCTCATCACACAGCTGACTATAGCAGAGTCTCTTCCCATCACACAGCTGACTATAGCAGAGTCTCCTCCCATCACACAGCTGACTATAGCAGAGTCTCCTCCCATCACACAGCTGACTATAGCAGAGTCTCCTCTCATCACACAGCTGACTATAGCAGTCTCCTCTCATCACACAGCTGACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1612 lncRNA downstream 36304 800930 ~ 808066 (-) True G1294
TU1578 lncRNA downstream 116066 727483 ~ 728304 (-) True G1265
TU1569 lncRNA downstream 145717 698423 ~ 698653 (-) True G1258
TU1564 lncRNA downstream 155378 688765 ~ 688992 (-) True G1253
TU1542 lncRNA downstream 210803 631974 ~ 633567 (-) False plcxd1
TU1641 lncRNA upstream 11945 856681 ~ 857091 (-) True G1320
TU1642 lncRNA upstream 31194 875930 ~ 876883 (-) True G1321
TU1664 lncRNA upstream 99287 944023 ~ 944952 (-) True G1336
TU1665 lncRNA upstream 100831 945567 ~ 945881 (-) True G1337
TU1681 lncRNA upstream 120326 965062 ~ 967554 (-) True G1351
XM_036977758.1 mRNA downstream 73054 749441 ~ 771316 (-) False rp2
XM_021584115.2 mRNA upstream 171006 1015742 ~ 1040056 (-) True chst7
XM_021607727.2 mRNA upstream 455833 1300569 ~ 1311123 (-) False nipa2
XM_021607802.2 mRNA upstream 455837 1300573 ~ 1311792 (-) True nipa2
XM_021608020.2 mRNA upstream 468770 1313506 ~ 1316587 (-) False nipa1
XM_036978631.1 mRNA upstream 468770 1313506 ~ 1317525 (-) True nipa1
TU1544 other downstream 162474 649951 ~ 681896 (-) True plcxd1
TU323 other downstream 600947 237129 ~ 243423 (-) True sft2d2a
TU247 other downstream 818697 25269 ~ 25673 (-) True G202
TU1695 other upstream 125449 970185 ~ 976099 (-) False G1355
TU1693 other upstream 125670 970406 ~ 974095 (-) False G1355
TU1694 other upstream 125670 970406 ~ 972696 (-) False G1355
TU2151 other upstream 908509 1753245 ~ 1760430 (-) True G1651
TU2331 other upstream 1247674 2092410 ~ 2097124 (-) True G1788

Expression Profile