RNA id: TU653


Basic Information

Item Value
RNA id TU653
length 247
lncRNA type intronic
GC content 0.41
exon number 1
gene id G541
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 858385 ~ 858631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtctgctgtcgataggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtagggttagggagtctgctgtcggtagggttagggagtctgctgtcggtagggtagggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU646 lncRNA upstream 19335 837981 ~ 839050 (+) True G535
TU565 lncRNA upstream 74269 698948 ~ 784116 (+) True G477
TU625 lncRNA upstream 78399 777327 ~ 779986 (+) True G514
TU608 lncRNA upstream 101959 749064 ~ 756426 (+) True G500
TU579 lncRNA upstream 129286 728321 ~ 729099 (+) True G486
TU654 lncRNA downstream 1129 859760 ~ 860156 (+) True G542
TU656 lncRNA downstream 18600 877231 ~ 884260 (+) True G544
TU670 lncRNA downstream 25857 884488 ~ 887639 (+) True G546
TU663 lncRNA downstream 28680 887311 ~ 940693 (+) False G545
TU665 lncRNA downstream 51538 910169 ~ 917390 (+) True G545
XM_021602630.2 mRNA upstream 240790 602103 ~ 617595 (+) True nit2
XM_036977160.1 mRNA upstream 361257 439965 ~ 497128 (+) False tbc1d23
XM_036978058.1 mRNA downstream 230765 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 315080 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 315080 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 315080 1173711 ~ 1299441 (+) False cyfip1
XM_036978109.1 mRNA downstream 315082 1173713 ~ 1300624 (+) False cyfip1
TU206 other upstream 538411 318047 ~ 319974 (+) False G166
TU83 other upstream 728122 120466 ~ 130263 (+) True G51
TU80 other upstream 738078 112959 ~ 120307 (+) True G50
TU55 other upstream 764667 56555 ~ 93718 (+) True G26
TU47 other upstream 786086 52711 ~ 72299 (+) True G19
TU707 other downstream 145152 1003783 ~ 1009153 (+) False G583
TU710 other downstream 145152 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1220267 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1220267 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1220267 2078898 ~ 2079603 (+) True G961

Expression Profile