RNA id: TU663


Basic Information

Item Value
RNA id TU663
length 1444
lncRNA type intronic
GC content 0.42
exon number 5
gene id G545
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 887311 ~ 940693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagtctgctttCGGTaaggcagggttagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtagggcaggggtagggagtctgctgtcggtaggggtagggagtctgctgtcggtagggttagggagtctgctgtcggtatggtaaggttagggagtctgctgtcggtaaggtagggttagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtagggcagggttagggagtctgctgttggtagggtaggggtagggagtcttttgtcggtagggtaaggagtctcctgccggtagggttagggagtttgctgtcggtagggttagggagtttgctgtcggtaggggtagggagtctgctgtcggtaggggtagggagtctgctgtcggtagggtaaggttagggagtctgctgtcggtagggtagggttagggagtctgctgccggtagggcagggttagggagtcttctgtcggtagggcagggttagggagtctgctgtcgttagggcagggttagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtaggggtagggagtctgctgtttgtagggtaggggtagggagtcttttgTCGGTCGGGTAAGGAGTCTCCttccggtagggtaggggtagggagtttgctgtcagtagggttagggagtttgctgtcggtagggttagggagtttgctgtcggtagggtaggggtagggagtctgctgtcggtaggggtagggagtctgctgtcggtagggtaaggttagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggcagggttagggagtctgctgtcggtagggttagggagtctgctgtcggtagggttagggagtctgctgtcggtatggtaaggttagggagtctgctgtcggtagggtaggggtagggagtcttttgtcggtagggtaaggagtctcctgccggtagggttagggagtttgctgtcggtaggtttagggagtttgctgtcggtaggggtagggagtctgctgtcggtaggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtaggggtagggagtctgctgtcggtagggtagggttagggagtctgctgtcggtagggcagagttagggagtctgctgtcggtagggtagtgttagggagtctgctgtcggtagggtagggttagggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656 lncRNA upstream 3051 877231 ~ 884260 (+) True G544
TU654 lncRNA upstream 27155 859760 ~ 860156 (+) True G542
TU653 lncRNA upstream 28680 858385 ~ 858631 (+) True G541
TU646 lncRNA upstream 48261 837981 ~ 839050 (+) True G535
TU625 lncRNA upstream 107325 777327 ~ 779986 (+) True G514
TU675 lncRNA downstream 606 941299 ~ 941545 (+) True G551
TU686 lncRNA downstream 27111 967804 ~ 968217 (+) True G562
TU600 lncRNA downstream 29848 970541 ~ 974094 (+) False slc9a7
TU604 lncRNA downstream 29848 970541 ~ 975999 (+) False slc9a7
TU598 lncRNA downstream 32249 972942 ~ 975999 (+) False slc9a7
XM_021602630.2 mRNA upstream 269716 602103 ~ 617595 (+) True nit2
XM_036977160.1 mRNA upstream 390183 439965 ~ 497128 (+) False tbc1d23
XM_036978058.1 mRNA downstream 148703 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 233018 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 233018 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 233018 1173711 ~ 1299441 (+) False cyfip1
XM_036978109.1 mRNA downstream 233020 1173713 ~ 1300624 (+) False cyfip1
TU206 other upstream 567337 318047 ~ 319974 (+) False G166
TU83 other upstream 757048 120466 ~ 130263 (+) True G51
TU80 other upstream 767004 112959 ~ 120307 (+) True G50
TU55 other upstream 793593 56555 ~ 93718 (+) True G26
TU47 other upstream 815012 52711 ~ 72299 (+) True G19
TU707 other downstream 63090 1003783 ~ 1009153 (+) False G583
TU710 other downstream 63090 1003783 ~ 1010207 (+) False G583
TU1201 other downstream 1138205 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1138205 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1138205 2078898 ~ 2079603 (+) True G961

Expression Profile