RNA id: TCONS_00026340


Basic Information

Item Value
RNA id TCONS_00026340
length 1094
RNA type mRNA
GC content 0.49
exon number 1
gene id XLOC_013320
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15770461 ~ 15771554 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagcagCTGGTTTGACATCATGCAGACCAAGCAGACATATTTCCCATCTGCTGTGCTTGGTGGCTTATCTGAGTTGTGTGACGTCGCTCAACATTCCCCCGATGACGCCAAACCTGCGCTCCGCTTTCTCTGCCACCCGCAGCAGCAGCGTTCTGGGTGCCAGTCAGCGAGCTGTGACCTTTGACCGCCTCTTGCTTAACATTGGCGAAGACTTCAACCCTGACACAGGCACCTTCCGATGCCGCCTGCCTGGCGCCTATTACTTCGCCTTTACAGTAGGAAAGTTCCCAAAGAAGATACTGTCAGTCATGCTGGTGAAGAATGGGCTGGAGGTGCAGGCCATGGCGTATGATGGATACCGAAACCACGGACGGAAGATGCAAAGCCAGAACATAATGATCAGCCTGAAGCCGATGGATACAGTTTATCTTCTTCTGCAGGAAAATCAAGATTATGCTATTTACAGTAACATCGGACCATACATCACCTTTAGCGGTTATCTTGTCTACCCAGACTCCACATCATCTGTCGGATATCTCAATAACCACCTGTCTCCTCCAGACCTTCATCTTCCAGGCTGTCCTCCTTTTACTGATACCCAGTATGATTGGAAAAGACGAAGAAGGATTGGCGAGGAACCGCGTTCTGCATTTTCAGTTGCAAGAACCACATCAGTACTGGGAGAAAGCAAAGGCCGTCGTGAAAGAGAAGCTCTTACGTTTGATGTTGAGTATGTTAACATAGGCGGGCATTTCAACAAAACATCTGGACATTTCACCTGCTATTTCCCTGGTGCTTATTACTTTGCGTTCACTGTTGGGAAACACCCTCGTCGGGCGGTTTCGGTGAAGCTCATGACAGGCAGAGGCGAGGTTCGGGCCATGGTGTTTGATGAGGATTTGTCGAGACGAAGAGAGATGCAGAGTCAGAGTCTGATGTTGTCATTGAAAAGAGGAGACAGCGTTTGGCTGTACAGTCAGCAGGATGACGGATTCGCCGTTTACAGCAATCAAGGACGTTACACAACCTTCTCTGGGTTTCTGGTCTATCCTGATTTCCACCAATATATGGGCATGGACAGAACTTTCCCCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027277 lncRNA downstream 177936 15570911 ~ 15592525 (-) False XLOC_013318
TCONS_00026330 lncRNA downstream 400006 15367500 ~ 15370455 (-) True XLOC_013313
TCONS_00026328 lncRNA downstream 449531 15318386 ~ 15320930 (-) True XLOC_013312
TCONS_00026327 lncRNA downstream 458550 15296036 ~ 15311911 (-) False XLOC_013312
TCONS_00027276 lncRNA downstream 578649 15188017 ~ 15191812 (-) True XLOC_013310
TCONS_00026344 lncRNA upstream 122190 15893744 ~ 15899848 (-) True XLOC_013322
TCONS_00027278 lncRNA upstream 167707 15939261 ~ 15970557 (-) False XLOC_013323
TCONS_00027279 lncRNA upstream 190486 15962040 ~ 15970573 (-) True XLOC_013323
TCONS_00027280 lncRNA upstream 219900 15991454 ~ 16018087 (-) True XLOC_013324
TCONS_00027281 lncRNA upstream 453236 16224790 ~ 16265890 (-) False XLOC_013327
TCONS_00026337 mRNA downstream 159605 15569627 ~ 15610856 (-) False XLOC_013318
TCONS_00026336 mRNA downstream 210644 15554381 ~ 15559817 (-) True XLOC_013317
TCONS_00026333 mRNA downstream 219005 15469015 ~ 15551456 (-) False XLOC_013316
TCONS_00026334 mRNA downstream 219101 15469857 ~ 15551360 (-) False XLOC_013316
TCONS_00026335 mRNA downstream 238445 15469913 ~ 15532016 (-) True XLOC_013316
TCONS_00026342 mRNA upstream 116276 15887830 ~ 15932704 (-) False XLOC_013322
TCONS_00026343 mRNA upstream 116285 15887839 ~ 15911394 (-) False XLOC_013322
TCONS_00026345 mRNA upstream 339631 16111185 ~ 16123222 (-) True XLOC_013325
TCONS_00026346 mRNA upstream 380220 16151774 ~ 16179129 (-) False XLOC_013326
TCONS_00026347 mRNA upstream 380220 16151774 ~ 16181952 (-) True XLOC_013326
TCONS_00026338 other downstream 160224 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other downstream 182260 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026322 other downstream 734192 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026312 other downstream 899325 14866383 ~ 14871136 (-) True XLOC_013303
TCONS_00026302 other downstream 1433003 14336627 ~ 14337458 (-) True XLOC_013296
TCONS_00026341 other upstream 104108 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026386 other upstream 1640316 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026401 other upstream 2797687 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026402 other upstream 2805920 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026403 other upstream 2806260 18577814 ~ 18577894 (-) True XLOC_013357

Expression Profile

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