RNA id: TU1711


Basic Information

Item Value
RNA id TU1711
length 1425
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G1367
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 998716 ~ 1000339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAGCTTCCCACCTTCTCCATTGCGGTTCCGTCAATGTGGATAgtggggtgttccctctgctgtttcctgaagttcacgatcaGCTCCATTGTTTTGTTGAAGTTAGGAGTGAGGTTATTTTAAAGTTCAGCAAGCAATGCGGCTTGACAGGGTCTTGTTACAGAGGATGCATGatcccgagtccgtaggggagttgcagccatgagacaagactgtaattggatatcacgaaaagtAAAAATAATACCCTACAACCCAGCCCCATACAGCTGTTAGAGGTGAATTGCATAACTAAGGCTGTGTCTTCAATGGCTACAGATATGACTATTCCCCACATCTTTTGACCATGGACACATTTTGACAAGTAGAGCACTCTATAAGGAaTTGAGCTTCTCCTCTCACGTCCGTCTCTCTATAGGGAaaagggcgccatttgggatgcgaCCCTAGATCGTTAACACCAGTGAGCTTCTCCTCTCACGTCTGTCTCTCTATAGGGAaaagggcgccatttgggatgcgaCCCTAGATCGTTAACATCAGTGAGCTTCTCCTCTCACGTCTGTCTCTCTATAGGGAaaagggcgccatttgggatgcgaCCCTAGATCGTTAACACCAGTGAGCTTCTCCTCTCACGTGTGTCTGTCTCACACATTCCAGATTCCAGTGGAACAATGTGGCATTCATTCACCCTGCAACGTTCCATAACCCGCCTGCATATAGGATCCACTGTGGACTCTGTCTGTACGTTCGGGACAACACACCCATACAGCCCACACATAGAACATTGGGGATTTGTTCCCTTCAAGAAGGAAGGGATTTGTTCATTAACATTCGAAGCAGATGAGACAAACACTAATGTGTCTGCCTAGAAAACAGAATCCAAATTCCACCCCCAGGACATGCTTGTTCAACCCGCAGCTTGTTGGGTTGGTCTCCTTTGCTGCACAGCTGAACAGAGGACAGGGTGCCATTGGCTTCATAACAGAGATCACAGGAAGAAGGGTCCTGAACATGATTCTCTAGACACTCCTCGAGATAGGAGAGAGTACTACTACATCTAATGCTACTGTAGAAAACCTTGAAGCTTTCTACACTTCCTGGGGTGATGTGTgtgtaacagggttggttatgtttccacttgcctgtaaagaaatgtgtatttcatGTTCAGGCATTCTTATTGGTTAGTTCAACTCTGATGACAATAAGGTGTGTTGTGATTGGCCCCGCTTGCAGATAGGGGGATATCACGAACACCAGGTCTccccagtatgaaaatgtgatgcaaggGGTAGGTCACGTTCTGAAAACTGTTGTCTATTTTCTATTTTACAATGTGTACAAGTTTGCTGTACGTTACTGATTTAGACATGTGTGGGTATATGGTACCTGTTAGGGATTGAGGGGCTTTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1688 lncRNA downstream 22617 970406 ~ 976099 (-) False G1355
TU1690 lncRNA downstream 22617 970406 ~ 976099 (-) False G1355
TU1689 lncRNA downstream 22617 972942 ~ 976099 (-) True G1355
TU1681 lncRNA downstream 31162 965062 ~ 967554 (-) True G1351
TU1665 lncRNA downstream 52835 945567 ~ 945881 (-) True G1337
TU1718 lncRNA upstream 18058 1018397 ~ 1021689 (-) True G1373
TU1738 lncRNA upstream 53348 1053687 ~ 1055335 (-) False G1382
TU1739 lncRNA upstream 53348 1053687 ~ 1060337 (-) True G1382
TU1757 lncRNA upstream 96138 1096477 ~ 1098591 (-) True G1398
TU1771 lncRNA upstream 116147 1116486 ~ 1117390 (-) True G1406
XM_036977758.1 mRNA downstream 227400 749441 ~ 771316 (-) False rp2
XM_021584115.2 mRNA upstream 15403 1015742 ~ 1040056 (-) True chst7
XM_021607727.2 mRNA upstream 300230 1300569 ~ 1311123 (-) False nipa2
XM_021607802.2 mRNA upstream 300234 1300573 ~ 1311792 (-) True nipa2
XM_021608020.2 mRNA upstream 313167 1313506 ~ 1316587 (-) False nipa1
XM_036978631.1 mRNA upstream 313167 1313506 ~ 1317525 (-) True nipa1
TU1695 other downstream 22617 970185 ~ 976099 (-) False G1355
TU1693 other downstream 24621 970406 ~ 974095 (-) False G1355
TU1694 other downstream 26020 970406 ~ 972696 (-) False G1355
TU1544 other downstream 316820 649951 ~ 681896 (-) True plcxd1
TU323 other downstream 755293 237129 ~ 243423 (-) True sft2d2a
TU2151 other upstream 752906 1753245 ~ 1760430 (-) True G1651
TU2331 other upstream 1092071 2092410 ~ 2097124 (-) True G1788
TU2559 other upstream 1533691 2534030 ~ 2534513 (-) True G1954
TU2862 other upstream 1742548 2742887 ~ 2743574 (-) True G2192
TU3379 other upstream 1978276 2978615 ~ 2978916 (-) True G2605

Expression Profile