RNA id: TCONS_00027278


Basic Information

Item Value
RNA id TCONS_00027278
length 1359
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_013323
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15939261 ~ 15970573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCAGTGAGAGATACAGGCtgaaggaagaagaaaaaaaaaacattctccaGAGAGTAGGAGGACGAGAGTTGCGCGGGTCTGTCTGTTGCAGCGTGAAGGAGGGGAGAGAAACCATTACGTAATAGAGAAGTTGTGCAGGAGAGTGGAGTTGAGCTGAGCCGCAATGCTGTGCAGCAGAGACACTTCACTTCAGTCAGaaaccggagcacccagggagaaacccacgccaacacgcaAAAACATGAACACAGAAATGCAAAGCCGGAACTTGAACTTCAACAGAATATAAACATACTGTAATtatttgggtgaaccatccctttactGTACTACTTTTACTGTTTCTTTGGTATATTCCATTATTGGCGTTAATAGTTACTcgtttcaacattcttcaaagtatcttcttttgtgtttaacagaacaaaatattcaaaatgtttGGAACAAATcaaaagatcacagatttttggTTAAATATCCATTAGCCACACACTTCTATGTTTCTGTCTTCAATTATAGAAACTGGACAAACATGTTCCAATTGTAACAAAAGACTGAACAAAAACTGGAGCGTCAACAATGCACTAAAACCCTAGGACACGCAGTCTGACAGCTCCCTTTGACGTCATTTCACACTTTGCAATACTCGGTGTAAACTAGCCTGCAGAATGTATACTCCCTTACAAAACCTCTGAAGTTGTTTCTATAGTTACAAATGTAATTTAACAAATATTGAACCTAGAAAACCACAAAACTTCCTTGCCATGATTTGTTATAATGAGAGAAGTTGCCATTGTAGTGTATCTATGCAATCTTCCTGATGCAATGCAGAAAATCTAGTTAATGCTAAAAGGCTTAAGCAAAGATCAGTGGTGTATATTGTGACCGCAGCACTTTGAATGCCAGAAAGCAGATGGTGAACTGAAGTGTCATTTGTTCTACACCTTAATTGCTAGATGAGTCATCACACAACAACGTAAAAGTGATTCAACGCAACCAGAAATTGAGCTGGGCGTGTGGTTATTCTACATAATATTTCTTAAGACTCAAGCGGATGTGTTCCTACATGAACTCATGAAAAAATGTGAAGCGTTTCAGAAACCGTTAAATGACATCTCATTTGGCTTTAATAAGTTTTATAATAAGCTTTAACAAGGTGCACTCAGTATGTTTTCAAGTGGTTATCGACCACCTttttgttcatccattcattttgcACACATTTTGATCTATATCATCACTCTGAATTATGGTGTTCCCTgataactgtatgtatgtataatgtacatttttagtATACAGTACGTTGTTGTCATATTTTTCTATACTTGTCAGGAGCACTATAGGGCTCTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026344 lncRNA downstream 39413 15893744 ~ 15899848 (-) True XLOC_013322
TCONS_00027277 lncRNA downstream 346736 15570911 ~ 15592525 (-) False XLOC_013318
TCONS_00026330 lncRNA downstream 568806 15367500 ~ 15370455 (-) True XLOC_013313
TCONS_00026328 lncRNA downstream 618331 15318386 ~ 15320930 (-) True XLOC_013312
TCONS_00026327 lncRNA downstream 627350 15296036 ~ 15311911 (-) False XLOC_013312
TCONS_00027280 lncRNA upstream 20897 15991454 ~ 16018087 (-) True XLOC_013324
TCONS_00027281 lncRNA upstream 254233 16224790 ~ 16265890 (-) False XLOC_013327
TCONS_00027282 lncRNA upstream 280517 16251074 ~ 16265890 (-) False XLOC_013327
TCONS_00027283 lncRNA upstream 288121 16258678 ~ 16265890 (-) False XLOC_013327
TCONS_00026348 lncRNA upstream 288230 16258787 ~ 16307937 (-) False XLOC_013327
TCONS_00026342 mRNA downstream 6557 15887830 ~ 15932704 (-) False XLOC_013322
TCONS_00026343 mRNA downstream 27867 15887839 ~ 15911394 (-) False XLOC_013322
TCONS_00026340 mRNA downstream 167707 15770461 ~ 15771554 (-) True XLOC_013320
TCONS_00026337 mRNA downstream 328405 15569627 ~ 15610856 (-) False XLOC_013318
TCONS_00026336 mRNA downstream 379444 15554381 ~ 15559817 (-) True XLOC_013317
TCONS_00026345 mRNA upstream 140628 16111185 ~ 16123222 (-) True XLOC_013325
TCONS_00026346 mRNA upstream 181217 16151774 ~ 16179129 (-) False XLOC_013326
TCONS_00026347 mRNA upstream 181217 16151774 ~ 16181952 (-) True XLOC_013326
TCONS_00026349 mRNA upstream 344034 16314591 ~ 16315822 (-) False XLOC_013328
TCONS_00026350 mRNA upstream 344034 16314591 ~ 16320585 (-) True XLOC_013328
TCONS_00026341 other downstream 63481 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026338 other downstream 329024 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other downstream 351060 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026322 other downstream 902992 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026312 other downstream 1068125 14866383 ~ 14871136 (-) True XLOC_013303
TCONS_00026386 other upstream 1441313 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026401 other upstream 2598684 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026402 other upstream 2606917 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026403 other upstream 2607257 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026408 other upstream 2725650 18696207 ~ 18701764 (-) True XLOC_013360

Expression Profile

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