RNA id: TU952


Basic Information

Item Value
RNA id TU952
length 540
lncRNA type intronic
GC content 0.49
exon number 2
gene id G768
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1557391 ~ 1558371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggcctacgttttaatgttttcattaggccactgctccactcgggaggcctcaggCCTACGTTACGTTTTAATGTTTTCATTAggccactgctccactcgggaggcctcaggCCTACGTTACGTTTTAATGTTTTCATTAGGCCACTGCTCCACTAGGGAGGCCTCAGGCCTACGTTACGTTTTAATGTTTTCATTAggccactgctccactcgggaggcctcaggcctacgttttaatgttttcattaggccactgctccactcgggaggcctcaggCCTACGTTACGTTTCTAATGTTTTCATTAggccactgctccactcgggaggcctcaggCCTACGTTTTAATGTTTTCATTAAGCCACTGCTCCACTTGGGAGgcctcaggCCTACGTTACGTTTTAATGTTTTCATTAggccactgctccactcgggaggcctcaggCCTACGTTACGTTTTAATGTTTTCATTAGGCCACTGCTCCACTCGAGAGGCCTCAGGCCTACGTTTTAATGTTTTCATTAggccactgctccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951 lncRNA upstream 755 1556262 ~ 1556636 (+) True G767
TU925 lncRNA upstream 60697 1495573 ~ 1496694 (+) True G745
TU920 lncRNA upstream 68404 1487568 ~ 1488987 (+) True G740
TU874 lncRNA upstream 207829 1347006 ~ 1349562 (+) True G697
TU872 lncRNA upstream 208442 1336314 ~ 1348949 (+) True G696
TU955 lncRNA downstream 8254 1566625 ~ 1567020 (+) True G771
TU998 lncRNA downstream 59897 1618268 ~ 1640955 (+) False G792
TU981 lncRNA downstream 60501 1618872 ~ 1623814 (+) False G792
TU987 lncRNA downstream 60501 1618872 ~ 1623814 (+) False G792
TU990 lncRNA downstream 60501 1618872 ~ 1660141 (+) False G792
XM_021608164.2 mRNA upstream 159011 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 229125 1327322 ~ 1328266 (+) True LOC118964682
XM_036978157.1 mRNA upstream 256767 1173713 ~ 1300624 (+) False cyfip1
XM_036979059.1 mRNA downstream 174418 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 174423 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 174434 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 174434 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 178374 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 547184 1003783 ~ 1010207 (+) False G583
TU707 other upstream 548238 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1237417 318047 ~ 319974 (+) False G166
TU83 other upstream 1427128 120466 ~ 130263 (+) True G51
TU80 other upstream 1437084 112959 ~ 120307 (+) True G50
TU1201 other downstream 520527 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 520527 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 520527 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 700512 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 700512 2258883 ~ 2263565 (+) False G998

Expression Profile