RNA id: TU955


Basic Information

Item Value
RNA id TU955
length 216
lncRNA type intronic
GC content 0.48
exon number 2
gene id G771
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1566625 ~ 1567020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTATGTGCCAGTCTAGTTCCTCAACGCTGGCCATAGTTATGTGCCAGTCTAGTTCCTCAATGCTGGCCATAGGTATGTGCCAGTCTAGTTCCTCAACACTGGCCATAGTTATGTGCCAGTCTAGTTCCTCAATGCTGGCCATAGGTATGTACCAGTCTAGTTCCTCAACACTGGCCATAGGTATGTACCAGTCTAGTTCCTCAACGCTGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU952 lncRNA upstream 8254 1557391 ~ 1558371 (+) True G768
TU951 lncRNA upstream 9989 1556262 ~ 1556636 (+) True G767
TU925 lncRNA upstream 69931 1495573 ~ 1496694 (+) True G745
TU920 lncRNA upstream 77638 1487568 ~ 1488987 (+) True G740
TU874 lncRNA upstream 217063 1347006 ~ 1349562 (+) True G697
TU998 lncRNA downstream 51248 1618268 ~ 1640955 (+) False G792
TU981 lncRNA downstream 51852 1618872 ~ 1623814 (+) False G792
TU987 lncRNA downstream 51852 1618872 ~ 1623814 (+) False G792
TU990 lncRNA downstream 51852 1618872 ~ 1660141 (+) False G792
TU996 lncRNA downstream 51852 1618872 ~ 1660141 (+) False G792
XM_021608164.2 mRNA upstream 168245 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 238359 1327322 ~ 1328266 (+) True LOC118964682
XM_036978157.1 mRNA upstream 266001 1173713 ~ 1300624 (+) False cyfip1
XM_036979059.1 mRNA downstream 165769 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 165774 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 165785 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 165785 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 169725 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 556418 1003783 ~ 1010207 (+) False G583
TU707 other upstream 557472 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1246651 318047 ~ 319974 (+) False G166
TU83 other upstream 1436362 120466 ~ 130263 (+) True G51
TU80 other upstream 1446318 112959 ~ 120307 (+) True G50
TU1201 other downstream 511878 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 511878 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 511878 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 691863 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 691863 2258883 ~ 2263565 (+) False G998

Expression Profile