RNA id: TU981


Basic Information

Item Value
RNA id TU981
length 2698
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G792
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1618268 ~ 1725820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatattatgacagaccagctacatctactgtctctattatattatgacagatcagctagatcaactgttcctattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctattgtctctgttatattatgacagaccagctagatctactgtctctattatagtatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtcgctattatattatgacagaccagctagatctactgactctatgatattatgacagaccagctagatctactgtctctatgatattatgacagaccagctagatcaactgtctctattataatatgacagaccagctagatcaactgtctctattataatatgacagaccatctagatctactgtctctattatattatgacataccagctagatctattgtctctattataatatgacagaccagctagatcaactgtctctgttataatatgacagaccagctagatctactgtctctgttataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctgttataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatcaactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctatgatattatgacagaccagctagatctactgtctctatgatattatgacagaccagctagatctactgtctctatgatattatgacagatcagctagatcaactgtctctcttatattttgacagaccagctagatctacagtatctatgatattatgacagaccagctagatctactgtctctattatattttgacagaccagctagatcaactgttcctattacaatatgacagaccagctagatctactgtcgctattatattatgacagaccagctagatctactgtctttattatattatgacagaccagctacatctactgtctctattatattatgacagaccagctagatctactgtctctattatagtatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtcgctattatattatgacagaccagctagatctactgactctatgatattatgacagaccagctagatctactgtctctatgatattatgacagaccagctagatcaactgtctctattataatatgacagaccagctagatcaactgtctctattataatatgacagaccatctagatctactgtctctattatattatgacataccagctagatcaactgtctctattataaaatgacagacaagctagatctactgtctttattataatatgacaaatcagctagatcaactgttcctattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgactctgttatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattataatatgtcagagcagctagatctactgtctctattataatatgacagaccagctagatctactgtctctgttataatatgacagaccagctagatctactgtctctgttatattatgacagaccagctagatctactgttctattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctatgatattatgacagcccagctacatctactgtctctattatattatgacagatcagctagatcaactgtctctatgatattatgatagaccagctatatctactgtctctgttatattttgacagaccatctagatcaaCAGTCTCTAtgatatcatgacagaccagctagatctactgtctctattatattttgacagaccagctagatcaactgttcctattacaatatgacagaccagctagatctagtgtctttattataatatgtcagagcagctagatctactgtctctattataatatgacagaccagctagatctactgtctctgttatattatgacagaccagctagatctactgttctaatataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctagtgactttattataatatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctgttatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatagtttgacggaccagctagatctactgtctctatgatgttatgacagatcagctacatctactgtctctattatattatgacagatcagctagatcaactgttcctattataatatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctatgatattatgacagaccagctagatctactgtctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU955 lncRNA upstream 51852 1566625 ~ 1567020 (+) True G771
TU952 lncRNA upstream 60501 1557391 ~ 1558371 (+) True G768
TU951 lncRNA upstream 62236 1556262 ~ 1556636 (+) True G767
TU925 lncRNA upstream 122178 1495573 ~ 1496694 (+) True G745
TU920 lncRNA upstream 129885 1487568 ~ 1488987 (+) True G740
TU984 lncRNA downstream 9681 1633495 ~ 1669752 (+) False G792
TU985 lncRNA downstream 30400 1654214 ~ 1660141 (+) False G792
TU988 lncRNA downstream 37476 1661290 ~ 1678362 (+) False G792
TU1007 lncRNA downstream 37476 1661290 ~ 1708729 (+) False G792
TU1008 lncRNA downstream 48137 1671951 ~ 1690012 (+) False G792
XM_036978985.1 mRNA upstream 22253 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 22253 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 220492 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 290606 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 318248 1193232 ~ 1300624 (+) True cyfip1
XM_036979059.1 mRNA downstream 108975 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 108980 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 108991 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 108991 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 112931 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 608665 1003783 ~ 1010207 (+) False G583
TU707 other upstream 609719 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1298898 318047 ~ 319974 (+) False G166
TU83 other upstream 1488609 120466 ~ 130263 (+) True G51
TU80 other upstream 1498565 112959 ~ 120307 (+) True G50
TU1201 other downstream 455084 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 455084 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 455084 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 635069 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 635069 2258883 ~ 2263565 (+) False G998

Expression Profile