RNA id: TU984


Basic Information

Item Value
RNA id TU984
length 1927
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G792
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1618268 ~ 1725820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatctactgtctctattatattttgacagaccagctagatcaactgttcctattacaatatgacagatcagctacatctactgtctcgattatattatgacagatcagctagatcaactgttcctattataatatgacagaccagctagatctactgtctctatgatattatgacagaccagctacatctactgtctctattatattatgacagatcatctagatcaactgttcctattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtcgctattatattatgacagaccagctagatctactgtctctattatattatgacataccagctagatctattgtctcgattatattatgacataccagctagatctattgtctctattataatatgacagaccagctagatcaactgtctcaattataaaatgacagacaagctagatctactgtctttattataatatgacagatcagctagatcaactgttcctaatataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctgttatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagatcagctagaactactgtctctattatattatgacagaccagctagatctacggtctctattatattatgacagatcagctagaactactgtctctattatattatgacagaccagctagatctactgtctctatgatattatgacagaccagctagatctactgtctctatgatattatgacagatcagctagatcaactgtctctatgatattatgacagaccatctatatctactgtctctgttatattttgacagaccagctagatcaacagtctctatgatattatgacagaccagctagatctactgcctctattatattttgacagaccagctagatcaactgttcctattacaatatgacagaccagctagatctactgtctttattatattatgacagaccagctagatctactgtctcgattatattatgacagatcagctagatcaactgttcctattataatatgacagaccagctagatctactgtctctatgatattatgacagaccagctacatctactgtctctattatattatgacagatcatctagatcaactgttcctattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtcgctattatattatgacagaccagctagatctactgtctctattatattatgacataccagctagatctattgtctcgattatattatgacataccagctagatctattgtctctattataatatgacagaccagctagatcaactgtctcaattataaaatgacagacaagctagatctactgtctttattataatatgacagagcagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattacaatatgacagaccagctagatctactgtctctattttattatgacagaccagcttgatatactgtctctattgtactatgacataccagctagatctactgtctctaatataatacgacagtccagctagatatactgtctctattataatatgacagaccagctagatctactgtctctattataatatgacagaccaggtagatctactgtctctattataatatgacagagcatgtagatccactgtctctattataattttacagaccagctagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU981 lncRNA upstream 9681 1618872 ~ 1623814 (+) False G792
TU987 lncRNA upstream 9681 1618872 ~ 1623814 (+) False G792
TU1000 lncRNA upstream 9681 1618872 ~ 1623814 (+) False G792
TU1002 lncRNA upstream 9681 1618872 ~ 1623814 (+) False G792
TU1004 lncRNA upstream 9681 1618872 ~ 1623814 (+) False G792
TU1008 lncRNA downstream 2199 1671951 ~ 1690012 (+) False G792
TU1020 lncRNA downstream 14423 1684175 ~ 1687294 (+) True G803
TU1024 lncRNA downstream 20963 1690715 ~ 1700579 (+) True G807
TU1025 lncRNA downstream 22523 1692275 ~ 1703738 (+) True G808
TU1015 lncRNA downstream 24164 1693916 ~ 1697565 (+) True G798
XM_036978985.1 mRNA upstream 36876 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 36876 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 235115 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 305229 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 332871 1193232 ~ 1300624 (+) True cyfip1
XM_036979059.1 mRNA downstream 63037 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 63042 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 63053 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 63053 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 66993 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 623288 1003783 ~ 1010207 (+) False G583
TU707 other upstream 624342 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1313521 318047 ~ 319974 (+) False G166
TU83 other upstream 1503232 120466 ~ 130263 (+) True G51
TU80 other upstream 1513188 112959 ~ 120307 (+) True G50
TU1201 other downstream 409146 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 409146 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 409146 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 589131 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 589131 2258883 ~ 2263565 (+) False G998

Expression Profile