RNA id: TU993


Basic Information

Item Value
RNA id TU993
length 1012
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G792
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1618268 ~ 1725820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatcaactgtcgctattgtactatgacagaccagctatatctattgtctctattatattatgacagaccagctagatctactgtctctatgtctctattatattatgacacaccagctagatctactgtctctattataatgtgacagaccagctatatctactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctatgtctctattatattatgacaaaccaactaaatctacagtctctattataatatgacagaccagctagatatactgtctctattatactatgacagaccatttagatttactgtctctattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattataatttgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagagcagctagatctactgtctctattgtattatgacagaacagcttgatatactgtctctattgtactatgacataccagctagatccagtgtctctattataattttacagaccagctagatctactgtctctattataatatgacaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattataatatgacagaccaggtagatctactgtctctattataatatgacagaccagctagatcaactgtctctattgtattatgacagaccagctatatcaacTGTcgctattgtactatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctatgtctctattatattatgacaaaccagctaaatctactgtctctattataatatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1008 lncRNA upstream 5517 1671951 ~ 1690012 (+) False G792
TU1020 lncRNA upstream 8235 1684175 ~ 1687294 (+) True G803
TU988 lncRNA upstream 17167 1661290 ~ 1678362 (+) False G792
TU984 lncRNA upstream 25777 1633495 ~ 1669752 (+) False G792
TU985 lncRNA upstream 35388 1654214 ~ 1660141 (+) False G792
TU1022 lncRNA downstream 2555 1711284 ~ 1724056 (+) True G805
TU1042 lncRNA downstream 30552 1739281 ~ 1751211 (+) True G824
TU1056 lncRNA downstream 59109 1767838 ~ 1768365 (+) True G836
TU1071 lncRNA downstream 101939 1810668 ~ 1811153 (+) True G848
TU1134 lncRNA downstream 188037 1896766 ~ 1897519 (+) True G901
XM_036978985.1 mRNA upstream 98910 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 98910 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 297149 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 367263 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 394905 1193232 ~ 1300624 (+) True cyfip1
XM_036979059.1 mRNA downstream 24060 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 24065 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 24076 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 24076 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 28016 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 685322 1003783 ~ 1010207 (+) False G583
TU707 other upstream 686376 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1375555 318047 ~ 319974 (+) False G166
TU83 other upstream 1565266 120466 ~ 130263 (+) True G51
TU80 other upstream 1575222 112959 ~ 120307 (+) True G50
TU1201 other downstream 370169 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 370169 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 370169 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 550154 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 550154 2258883 ~ 2263565 (+) False G998

Expression Profile