RNA id: TCONS_00027281


Basic Information

Item Value
RNA id TCONS_00027281
length 1492
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id XLOC_013327
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16224790 ~ 16307937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGCATTAATTGGAGAATTCCAACTGGACATAATTGAGCTCTCGAATCTCCAGCTCCAGCTGATATTTGTTTTCCATGTATCTGACCTGATCAGTCTGTCTGTGCTCTTTGTTTCCAGGTACTAACACCACTATTTGTTAGCATTTACATCAATCACAGACGGCTTCTCCTCCTGATCTCCATGACTTTATGTTGCTCTCTGAAACAGCCCAGCTCTGTGTGAAAAGGGTCAAACCCATTGGCCTGCTGATGGATCTCATCTGGAGGAGAGTGTGCTGGATCTCCTGCCTCATGTGTGCTGCACCATCAGTCTTACGCTGGAGAAATGATGGAGCAGTGACCacgaggagagagagagagagagatcagcaACACTTCAAAGCATGCACAGAAACTCACGCCATCTGTTAAAGTCACCAGAAAGGAATCCACTCAAACCCAAAGCATCATCTACTAGAGCGGTGATACAGTGCCAAGCCCAGCAGATACAGGAGACTGGAAATACAGGACACATGGTGCAAATCAAACCCAGGAGAGCGGCGAAAACACACAGGTTAACCCGAAGCAACTATATGCTCCGTTCCACCAAAAAACGTGTCAGAGTAATGCATCTCTGAGGATTAAAAACTTAAAAGCCCACATGAGCAGGGCATCGTGGGAGCGTGTCCTGGCTTTGGGCTTGGGTTCGGCTACCTGCTTTTCCCCTCTGCTGACCCGCGGAAGGCCCTGCGCCTCAGGCTACAGGCCGGCCGCCGCTCCCCTGCTTTCCCCCAGCAGGGGCTTACATTTCAACCGAGCGCTCCAAGCCCTCTTCTGGAGGTGATTAGCCCCCCGAAGCCGTGACAGATTCTTTCCGAGATATCCGCCTCACTCGTGTTTATTTTATCCCAGCTCTCTTTTGTGGATGTGCTGGACATGAAGTAACCCACTTGAAAATGGGTATCGGCTTACATACGCCACGGGACTGGCGGAGGAGTcggaacaacaacaaaaaagaaaagaaagaaagcaacCATTATACATATAAAGAGGACGTCTTTGCATTTATTTGACCTGCTCTTTAGCATGACTCTCTATCTCTTATCTCTTACGCTTGACCCCCATTGGTAGCATCGGTTTGGACGCCCCCTGCCCCCATCGGGTGGCACTGTGGCTACAGACGGCGCTCTCTCTCAGTCTGGGACCCCTAAGTGCCCGACCTCCTCTGTACTTAACTCAATTTCACACTTCAGGTCCGCTACAAAGCCTCCTGAAATACAATCATCTTGTTTATTCTCCACCATCCCAAACAACCTAATGGCTGGCTATTTACGAGCTCCATCATGTGCGTTCAATTTGATCAGACGATGTGTATGTTTTCATGTATTACACGCAATGTAGATCCAAGCATGTCCCAAATGACTGTATGGATTGAGCCCATGGGGAGTAATGAAAGTGGAGTAGTTTCTAAATGGGGAAATTATGCAAGTTCCATATTTTGGTAAATGACAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027280 lncRNA downstream 206703 15991454 ~ 16018087 (-) True XLOC_013324
TCONS_00027279 lncRNA downstream 254217 15962040 ~ 15970573 (-) True XLOC_013323
TCONS_00027278 lncRNA downstream 254233 15939261 ~ 15970557 (-) False XLOC_013323
TCONS_00026344 lncRNA downstream 324942 15893744 ~ 15899848 (-) True XLOC_013322
TCONS_00027277 lncRNA downstream 632265 15570911 ~ 15592525 (-) False XLOC_013318
TCONS_00027284 lncRNA upstream 30991 16296881 ~ 16307933 (-) True XLOC_013327
TCONS_00026958 lncRNA upstream 106320 16372210 ~ 16377341 (-) True XLOC_013329
TCONS_00026959 lncRNA upstream 1225431 17491321 ~ 17492706 (-) True XLOC_013345
TCONS_00026394 lncRNA upstream 1442068 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00027285 lncRNA upstream 1511637 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00026347 mRNA downstream 42838 16151774 ~ 16181952 (-) True XLOC_013326
TCONS_00026346 mRNA downstream 45661 16151774 ~ 16179129 (-) False XLOC_013326
TCONS_00026345 mRNA downstream 101568 16111185 ~ 16123222 (-) True XLOC_013325
TCONS_00026342 mRNA downstream 292086 15887830 ~ 15932704 (-) False XLOC_013322
TCONS_00026343 mRNA downstream 313396 15887839 ~ 15911394 (-) False XLOC_013322
TCONS_00026349 mRNA upstream 48701 16314591 ~ 16315822 (-) False XLOC_013328
TCONS_00026350 mRNA upstream 48701 16314591 ~ 16320585 (-) True XLOC_013328
TCONS_00026351 mRNA upstream 121855 16387745 ~ 16392229 (-) False XLOC_013330
TCONS_00026352 mRNA upstream 121855 16387745 ~ 16392448 (-) False XLOC_013330
TCONS_00026353 mRNA upstream 121855 16387745 ~ 16395668 (-) False XLOC_013330
TCONS_00026341 other downstream 349010 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026338 other downstream 614553 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other downstream 636589 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026322 other downstream 1188521 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026312 other downstream 1353654 14866383 ~ 14871136 (-) True XLOC_013303
TCONS_00026386 other upstream 1145980 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026401 other upstream 2303351 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026402 other upstream 2311584 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026403 other upstream 2311924 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026408 other upstream 2430317 18696207 ~ 18701764 (-) True XLOC_013360

Expression Profile

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