RNA id: TU1020


Basic Information

Item Value
RNA id TU1020
length 652
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G803
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1684175 ~ 1687294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctctattataatttgacataccaggtagatctaatgtctctgttataatatgacagaccagctagatctgctgtctctattatattatgacagaccagctagatctactgtctctattataatttgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagagcagctagatctactgtctctattgtattatgcagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagagcagctagatctactgtctctattgtattatgacagaccagcttgatatactgtctctattgtactatgacataccagctagatctactgtctgtattataatatgacagaccagctagatctactgtctctattataatatgacagagcatgtagatccactgtctctattataattttacagaccagctagatctactgtctctattataatatgacaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatattatgacagattagctagatctactgtctctatattatgacagaccagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU988 lncRNA upstream 5813 1661290 ~ 1678362 (+) False G792
TU984 lncRNA upstream 14423 1633495 ~ 1669752 (+) False G792
TU985 lncRNA upstream 24034 1654214 ~ 1660141 (+) False G792
TU1003 lncRNA upstream 43220 1618872 ~ 1640955 (+) False G792
TU1000 lncRNA upstream 60361 1618872 ~ 1623814 (+) False G792
TU1024 lncRNA downstream 3421 1690715 ~ 1700579 (+) True G807
TU1025 lncRNA downstream 4981 1692275 ~ 1703738 (+) True G808
TU1015 lncRNA downstream 6622 1693916 ~ 1697565 (+) True G798
TU993 lncRNA downstream 8235 1695529 ~ 1708729 (+) False G792
TU1001 lncRNA downstream 8235 1695529 ~ 1725820 (+) False G792
XM_036978985.1 mRNA upstream 87556 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 87556 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 285795 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 355909 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 383551 1193232 ~ 1300624 (+) True cyfip1
XM_036979059.1 mRNA downstream 45495 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 45500 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 45511 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 45511 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 49451 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 673968 1003783 ~ 1010207 (+) False G583
TU707 other upstream 675022 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1364201 318047 ~ 319974 (+) False G166
TU83 other upstream 1553912 120466 ~ 130263 (+) True G51
TU80 other upstream 1563868 112959 ~ 120307 (+) True G50
TU1201 other downstream 391604 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 391604 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 391604 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 571589 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 571589 2258883 ~ 2263565 (+) False G998

Expression Profile