RNA id: TU1024


Basic Information

Item Value
RNA id TU1024
length 1243
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G807
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1690715 ~ 1700579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatctactccctgttttctattatgacagaccagctagagcaactgtctctattgtattatgacagaccagctagatcaactgtctctattgtactatgacagaccagctatatctactgtctctattatattatgacagaccagctagatctactgtctctatgtctctattatattatgacagaccagctagatctactgtctctatgtctcaattatattatgacacaccagctaaatctactgtctctattataatatgacagaccagGTAGacctactgtctgtattataattcgacagaccagctagatctactgtttctattatatgacagaccagctagatatactgtctctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtatctatgtatctattataatatgacagaccagctagatctactgtctctattgtattatgacagaccagcttgatatactgtctctattgtactatgacataccagctagatctactgtctctattataatatgacaggccagctagatatactgtctctattatactatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctatattataatatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattataattttacagaccagatagatctactgtctctattataatatgacaccagctagatctactgtctctattataatatgacagaccagctagatctactgtctctattatgttatgatagattagctagatctactgtctctattatattatgacagaccagctagatctactgtctctgatataatatgacaggccagctagatctactccctgttttctattatgacataccagctagatatacggtctctattataatttgacagaccagctagatctactgtctctgttataatatgacaggccagctagatctactccctgttttctattatgacagaccagctagatcaactgtctctattgtattatgacagaccagctagatcaagtgtctctattgtactatgacagaccagctatatctactgtctctattatattatgacagaccagctagatctactgtctctatgtctctattatattatgacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1008 lncRNA upstream 703 1671951 ~ 1690012 (+) False G792
TU1020 lncRNA upstream 3421 1684175 ~ 1687294 (+) True G803
TU988 lncRNA upstream 12353 1661290 ~ 1678362 (+) False G792
TU984 lncRNA upstream 20963 1633495 ~ 1669752 (+) False G792
TU985 lncRNA upstream 30574 1654214 ~ 1660141 (+) False G792
TU1006 lncRNA downstream 185 1700764 ~ 1725820 (+) False G792
TU982 lncRNA downstream 6722 1707301 ~ 1725820 (+) True G792
TU1022 lncRNA downstream 10705 1711284 ~ 1724056 (+) True G805
TU1042 lncRNA downstream 38702 1739281 ~ 1751211 (+) True G824
TU1056 lncRNA downstream 67259 1767838 ~ 1768365 (+) True G836
XM_036978985.1 mRNA upstream 94096 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 94096 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 292335 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 362449 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 390091 1193232 ~ 1300624 (+) True cyfip1
XM_036979059.1 mRNA downstream 32210 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 32215 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 32226 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 32226 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 36166 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 680508 1003783 ~ 1010207 (+) False G583
TU707 other upstream 681562 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1370741 318047 ~ 319974 (+) False G166
TU83 other upstream 1560452 120466 ~ 130263 (+) True G51
TU80 other upstream 1570408 112959 ~ 120307 (+) True G50
TU1201 other downstream 378319 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 378319 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 378319 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 558304 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 558304 2258883 ~ 2263565 (+) False G998

Expression Profile