RNA id: TU1022



Basic Information


Item Value
RNA id TU1022
length 677
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G805
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1711284 ~ 1724056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtctttattatattatgacagaccagctagatctactgtctctatgtctctattatattatgacagaccagctagatctacagtctctatgtgtctactatattatgagagaccagctagatctactgtctctattataatatgacagaccaggtagatctactgtctctattataatattacagaccagctagatctactgtctctattgtattatgacagaccagctagatcaactgtcgctattgtactatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctactgtcgctatgtctctattatattatgacaaaccagctaaatctactgtctctattataatatgacagaccagctagatatactgtctctattatactatgacagaccagctagatttactgtctctattataatatgacagaccagctagatctactgtctctattataatatgacataccagctagatctactgtctctattataatatgacaccagctacatctctgtctctattataatatgacagaccagctagatctactgtcgctattatattatgacagaccagctagatctactgtctttattatattatgacagaccagctagatctactgtccctatgtctctattatattatgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1007 lncRNA upstream 2555 1661290 ~ 1708729 (+) False G792
TU993 lncRNA upstream 2555 1695529 ~ 1708729 (+) False G792
TU1025 lncRNA upstream 7546 1692275 ~ 1703738 (+) True G808
TU1024 lncRNA upstream 10705 1690715 ~ 1700579 (+) True G807
TU1015 lncRNA upstream 13719 1693916 ~ 1697565 (+) True G798
TU1042 lncRNA downstream 15225 1739281 ~ 1751211 (+) True G824
TU1056 lncRNA downstream 43782 1767838 ~ 1768365 (+) True G836
TU1071 lncRNA downstream 86612 1810668 ~ 1811153 (+) True G848
TU1134 lncRNA downstream 172710 1896766 ~ 1897519 (+) True G901
TU1162 lncRNA downstream 254051 1978107 ~ 1978417 (+) True G927
XM_036978985.1 mRNA upstream 114665 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 114665 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 312904 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 383018 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 410660 1193232 ~ 1300624 (+) True cyfip1
XM_036979059.1 mRNA downstream 8733 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA downstream 8738 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA downstream 8749 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA downstream 8749 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA downstream 12689 1736745 ~ 1770434 (+) True LOC110520782
TU710 other upstream 701077 1003783 ~ 1010207 (+) False G583
TU707 other upstream 702131 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1391310 318047 ~ 319974 (+) False G166
TU83 other upstream 1581021 120466 ~ 130263 (+) True G51
TU80 other upstream 1590977 112959 ~ 120307 (+) True G50
TU1201 other downstream 354842 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 354842 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 354842 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 534827 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 534827 2258883 ~ 2263565 (+) False G998

Expression Profile