RNA id: TU1173


Basic Information

Item Value
RNA id TU1173
length 394
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G938
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2010942 ~ 2044901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacatggctgagctggaaggcagccacagttcgtCCTTATTTAAaggatcaagctgatcctaactgttataggccaatttttattttgccctgtttatcaaaagtgttggaaaatcttgttaataatcaaatcaaatgttatttgtcacatacacatggttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacgtggttagcagatgttaatggtcacatacacatggttagcagatgttaatgcgagtgtagcaaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtaatctaacctaacaatttcacaacaactaccttatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1162 lncRNA upstream 32525 1978107 ~ 1978417 (+) True G927
TU1134 lncRNA upstream 113423 1896766 ~ 1897519 (+) True G901
TU1071 lncRNA upstream 199789 1810668 ~ 1811153 (+) True G848
TU1056 lncRNA upstream 242577 1767838 ~ 1768365 (+) True G836
TU1042 lncRNA upstream 259731 1739281 ~ 1751211 (+) True G824
TU1190 lncRNA downstream 5458 2050359 ~ 2050631 (+) True G951
TU1191 lncRNA downstream 18278 2063179 ~ 2063685 (+) True G952
TU1096 lncRNA downstream 31815 2076716 ~ 2077288 (+) True G864
TU1085 lncRNA downstream 53586 2098487 ~ 2101039 (+) False nme7
TU1086 lncRNA downstream 53586 2098487 ~ 2101039 (+) False nme7
XM_036979332.1 mRNA upstream 43366 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA upstream 43366 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA upstream 43366 1859414 ~ 1967576 (+) True tmem131
XR_005052028.1 mRNA upstream 44652 1859377 ~ 1966290 (+) False tmem131
XM_036979236.1 mRNA upstream 240508 1736745 ~ 1770434 (+) True LOC110520782
XM_036979903.1 mRNA downstream 131771 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 167234 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 167234 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 167235 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 167235 2212136 ~ 2258325 (+) False zbtb11
TU710 other upstream 1000735 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1001789 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1690968 318047 ~ 319974 (+) False G166
TU83 other upstream 1880679 120466 ~ 130263 (+) True G51
TU80 other upstream 1890635 112959 ~ 120307 (+) True G50
TU1201 other downstream 33997 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 33997 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 33997 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 213982 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 213982 2258883 ~ 2263565 (+) False G998

Expression Profile