RNA id: TU1203


Basic Information

Item Value
RNA id TU1203
length 383
RNA type TUCP
GC content 0.42
exon number 4
gene id G961
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2078898 ~ 2079603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagatggagacggacgagagacagatggagacggacgagagagggagacagatggagacgggggagaggcagatggagacgggagagagaggggagacagatggagacgggagagagacgggagacagatggagacgggagagagacagatggagacgaggagagacagatggagacggaagagagagatgtacagactcattgagcatagccttgctattgagaaaggccgccgtaggcagatctggttctcaagagaagacaggctatgtgctcactgcccacaaaatgaggtggaaactgagctgcacttcctaacctcctgcccaatgtatgaccatattagagatacatatttccctcagattacacagacccacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096 lncRNA upstream 1610 2076716 ~ 2077288 (+) True G864
TU1191 lncRNA upstream 15213 2063179 ~ 2063685 (+) True G952
TU1190 lncRNA upstream 28267 2050359 ~ 2050631 (+) True G951
TU1187 lncRNA upstream 35188 2043353 ~ 2043710 (+) True G948
TU1185 lncRNA upstream 42343 2035856 ~ 2036555 (+) True G946
TU1085 lncRNA downstream 18884 2098487 ~ 2101039 (+) False nme7
TU1086 lncRNA downstream 18884 2098487 ~ 2101039 (+) False nme7
TU1087 lncRNA downstream 18884 2098487 ~ 2101039 (+) False nme7
TU1088 lncRNA downstream 18884 2098487 ~ 2101039 (+) False nme7
TU1089 lncRNA downstream 18884 2098487 ~ 2101039 (+) True nme7
XM_036979332.1 mRNA upstream 111322 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA upstream 111322 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA upstream 111322 1859414 ~ 1967576 (+) True tmem131
XR_005052028.1 mRNA upstream 112608 1859377 ~ 1966290 (+) False tmem131
XM_036979236.1 mRNA upstream 308464 1736745 ~ 1770434 (+) True LOC110520782
XM_036979903.1 mRNA downstream 97069 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 132532 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 132532 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 132533 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 132533 2212136 ~ 2258325 (+) False zbtb11
TU710 other upstream 1068691 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1069745 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1758924 318047 ~ 319974 (+) False G166
TU83 other upstream 1948635 120466 ~ 130263 (+) True G51
TU80 other upstream 1958591 112959 ~ 120307 (+) True G50
TU1265 other downstream 179280 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 179280 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 564732 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1135094 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1423666 3503269 ~ 3503581 (+) True G2464