RNA id: TU2620


Basic Information

Item Value
RNA id TU2620
length 1714
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G2004
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2616569 ~ 2618562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTAGTCTGGATGTCAACCTCAGCATGTTGGAGGGAAACCAATTTTATTCAGATCAATTCATTACAGTAGATTATTGATTTATCATTGATATAATTGTCAACTATTATTTACAAAAACATCTTAAATTCAGTGAACATATTCAGTGAACATATACTTATATTTATAACAATAAACTATTACTGTATATCAAGTGTTTAATTTCTACATTAAATTgacattattaaaaaaaaattgtgaggCTGGAGCAGGTTTTAAAGAGTCAGCGAGGATGGAGTGAGGCTGGAGCAGGTTTTAAAGAGTCAGGGAGGATGGAGTGAGGCTGGAGCAGGTTTTATAGCATCAGGGAGGATGGGGTGAGGCTAGAGCAGGTTTTATAGAGTCAGGGAGGATGGGGTGAGGCTGGAGCAGGTTTTATAGAGTCGGGGAGGATGGGGTGTGGATGTAGCAGGTTTACATCCAAACTATTTCCTCTGAAtctgacataaaaaaaaatgtattgtgaaaGTTGCTCCAGGTATTCCCTATGGGTTTGACATAAAAAGCAGTCAGCCAGAGTGCCAGGGCTGGTTCTTAGGCTGTTTAACTATTTTCAAGAGAGGCAGAACCATCCATAAACCTTCCAGAATAGaatacccctcccctcccctcccctctccttcctttcacCTCCCCTCGCCTCAAACATACTCTGGAGGTTTCCTGGAGGAATGATCTGTACTCCGGACCTCGTATCTCTTCGGCGATTGTGCCTGGGGTGCTCCGTCTGCCTGGGGTCCCCTGGAATGGTCAGCCTGGGGTGCTCCGTAATAGTCTGCCTGGGGTCCCCTGGAATGGTCTGCCAGAGGCCCCAGACAGGATACAAACAGGAGTAATCCAGCCACCAGCAGGAGGAACCCCCCCACCCAGCCGCAAAACAGGGCATCACCAAACTCCCAGCGTGGCACCACCTCCGGCACCGACTCATCAAAATAACGCATTACCGTCAAGTGGGCGACGTAGGAAACAGGGACCAGAGAAAGCACCCCAGCTACCATCCCCAGCACCCCTCCTGCCACCTTCATAATCCTCTTGGCCCTGCAGCCCTCCAGCCCCTGGCTGAAGCTGTTGACCAGGTGAAGACCAGGGATAGCCAGCAGCAGGCCCAGCAGGCCCACAGCCAGGGAGATACACATGAAGACACGGGCCACCTTGATGTCCTGAGGCAGGCCCAGCAGGCTGTCGTAGGGTCGACACTCCATCCCCCCCATGTCCTGGACCACGCAGGTCTCCCAGAGACCCAGCTCATAGCTCTCTGTGAGCAAGAGGTCTGTGGACAGGGTCAGCCACTGTGGCATCAGAGTGGTGGCCAGAGCACACAGCCAGGCTGCCATGTACACTACCATCCCCAGCAGCTCGAGAGTGGAGGCACACAGGTCCATGGTTTACCCGACCCTCTCTGGCCTCGCTCCGTTGACCCTCAAGAGCTCTTCTCTGGCTTCTGGAGAGGTTCTGGAGAGGTCTGGCAGCTCCTGATGTCCAGTAGGAACAGAGAGGCTTCTCACAGCACCTGCTAATTACTGCTGAATACTGTTCTGTTCACAGGCAGGCGGAGAGCTCCTTCACTAACAGTCCCACtccacagaaacacacatcatCTGGCTGGAGGCTGGGAGGAAAGGGGCTCTCTGGCACATggccctcctcttccctcccctacCTCCTGCTGAGGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2566 lncRNA upstream 78815 2537525 ~ 2537754 (+) True G1961
TU2564 lncRNA upstream 79525 2536747 ~ 2537044 (+) True G1959
TU2563 lncRNA upstream 80108 2536145 ~ 2536461 (+) True G1958
TU2562 lncRNA upstream 80774 2535583 ~ 2535795 (+) True G1957
TU2540 lncRNA upstream 84252 2531549 ~ 2532317 (+) True G1942
TU2644 lncRNA downstream 29465 2648027 ~ 2656615 (+) True G2018
TU2722 lncRNA downstream 164205 2782767 ~ 2784184 (+) True G2084
TU2698 lncRNA downstream 168256 2786818 ~ 2796573 (+) False G2068
TU2699 lncRNA downstream 168256 2786818 ~ 2798145 (+) True G2068
TU2903 lncRNA downstream 197728 2816290 ~ 2816626 (+) True G2223
XM_021615461.2 mRNA upstream 36261 2538334 ~ 2580308 (+) True LOC110531937
XR_005052094.1 mRNA upstream 358244 2212136 ~ 2258325 (+) False zbtb11
XM_036989274.1 mRNA downstream 780864 3399426 ~ 3400148 (+) True LOC118966170
XM_036981292.1 mRNA downstream 984101 3602663 ~ 3624582 (+) True bcl6aa
XR_005052490.1 mRNA downstream 1204574 3823136 ~ 3825865 (+) False LOC118965227
trnap-cgg mRNA downstream 1229061 3847623 ~ 3847694 (+) True trnap-cgg
trnap-ugg mRNA downstream 1229326 3847888 ~ 3847959 (+) True trnap-ugg
TU1265 other upstream 353004 2258883 ~ 2263565 (+) False G998
TU1266 other upstream 353004 2258883 ~ 2263565 (+) False G998
TU1201 other upstream 536966 2078898 ~ 2079603 (+) False G961
TU2640 other downstream 25773 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 596135 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 884707 3503269 ~ 3503581 (+) True G2464
TU4120 other downstream 1556761 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 1780342 4398904 ~ 4399444 (+) True G3234

Expression Profile