RNA id: TU3402


Basic Information

Item Value
RNA id TU3402
length 240
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G2624
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3013073 ~ 3013795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagatgaggtaataacgaggccatatacagggagtacctgtcccccagtcaatgtccaggggtacgaggtagatgaggtaataacgaggccatatacagggagtacctgtaccccagtcaatgtccaggggtacgaggtagatgAGGTAATAACGAGGCCATCTACAGGAAGTACCTGTACCCCagtcaatgtccaggggtacgaggtagatgaggtaataacgaggccatatacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3401 lncRNA downstream 589 3012267 ~ 3012484 (-) True G2623
TU3383 lncRNA downstream 26129 2986723 ~ 2986944 (-) True G2609
TU3382 lncRNA downstream 26502 2986313 ~ 2986571 (-) True G2608
TU3381 lncRNA downstream 27195 2985616 ~ 2985878 (-) True G2607
TU3380 lncRNA downstream 28491 2984303 ~ 2984582 (-) True G2606
TU3405 lncRNA upstream 10437 3024232 ~ 3027485 (-) False G2625
TU3406 lncRNA upstream 10437 3024232 ~ 3026760 (-) False G2625
TU3407 lncRNA upstream 10437 3024232 ~ 3027485 (-) False G2625
TU3404 lncRNA upstream 12602 3026397 ~ 3026760 (-) True G2625
TU3413 lncRNA upstream 27234 3041029 ~ 3042551 (-) True G2631
XM_036989269.1 mRNA downstream 9079 3002309 ~ 3003994 (-) True LOC118966169
XM_036980806.1 mRNA downstream 197996 2636662 ~ 2815077 (-) False LOC110523943
XM_036980846.1 mRNA downstream 197996 2661728 ~ 2815077 (-) True LOC110523943
XM_021615446.2 mRNA downstream 394490 2616583 ~ 2618583 (-) True LOC110531934
XM_036980621.1 mRNA downstream 535883 2462283 ~ 2477190 (-) True LOC118964912
XM_036980955.1 mRNA upstream 8815 3022610 ~ 3514868 (-) False LOC110518923
XM_036980905.1 mRNA upstream 8815 3022610 ~ 3524283 (-) False LOC110518923
XM_036980981.1 mRNA upstream 8815 3022610 ~ 3524283 (-) False LOC110518923
XM_036981022.1 mRNA upstream 8815 3022610 ~ 3524283 (-) True LOC110518923
XM_036981138.1 mRNA upstream 277389 3291184 ~ 3294573 (-) False LOC118964935
TU3379 other downstream 34157 2978615 ~ 2978916 (-) True G2605
TU2862 other downstream 269499 2742887 ~ 2743574 (-) True G2192
TU2559 other downstream 478560 2534030 ~ 2534513 (-) True G1954
TU2331 other downstream 915949 2092410 ~ 2097124 (-) True G1788
TU2151 other downstream 1252643 1753245 ~ 1760430 (-) True G1651
TU3553 other upstream 325918 3339713 ~ 3341868 (-) True G2730
TU3579 other upstream 371511 3385306 ~ 3388215 (-) True G2749
TU3613 other upstream 428543 3442338 ~ 3444099 (-) True G2772
TU3708 other upstream 618512 3632307 ~ 3640893 (-) True smx5
TU3986 other upstream 1068368 4082163 ~ 4121474 (-) True LOC110524598

Expression Profile